New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 2412225NA (NA)41 (1.230) 33/100 NT 95.3% intergenic (‑55/‑782) insA/yfbQ IS1 element protein/predicted aminotransferase
?W3110S.gb = 3748807 2 (0.060)coding (176/984 nt) tnaB tryptophan transporter of low affinity

GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2412157‑2412225
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAT  <  W3110S.gb/3748807‑3748741
                                                                                                                                        
GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                    <  1:932802/70‑1
GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                    <  1:2548624/70‑1
  AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTT                                                                 <  1:2625321/71‑1
    CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT                                                               >  1:1054317/1‑71
      GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCAACACCT                                                                    >  1:2114922/1‑64
        AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG                                                            <  1:858884/70‑1
           CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                    <  1:2232066/59‑1
            ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA                                                       <  1:338431/71‑1
               GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAA                                                     >  1:2875837/1‑70
               GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAG                                                         >  1:2704254/1‑66
                 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT                                                  <  1:2451415/71‑1
                      CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATT                                             <  1:1442244/71‑1
                      CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                    <  1:79096/48‑1
                       TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAA                                                          >  1:2117844/1‑57
                       TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG                                                            >  1:576901/1‑55
                       TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATT                                                              <  1:1006349/53‑1
                        CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT                                           >  1:446983/1‑71
                         AAAAACACCATCATACTCTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA                                               >  1:3074863/1‑66
                         AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGATGCAAATTTAAAT                                              <  1:3108249/67‑1
                         AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA                                            <  1:815750/69‑1
                         AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT                                              <  1:3104631/67‑1
                         AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAAT                                                    >  1:2228558/1‑61
                         AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT                                                               <  1:1168936/50‑1
                         AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT                                                                  >  1:1894569/1‑47
                          AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC                                          <  1:286053/70‑1
                           AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC                                        >  1:839637/1‑71
                            AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCG                                       >  1:1959782/1‑71
                            AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCG                                       <  1:1219663/71‑1
                            AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCG                                       <  1:1300546/71‑1
                             ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGT                                      >  1:2509728/1‑71
                              CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA                                                 <  1:2818725/59‑1
                                      TACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAG                             <  1:1243718/71‑1
                                      TACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAG                             <  1:1669289/71‑1
                                        CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTT                           >  1:796932/1‑71
                                        CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTT                           <  1:2453645/71‑1
                                           TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT                         >  1:38701/1‑70
                                            AAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAA                                                     >  1:429382/1‑41
                                            AAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAA                                                      <  1:1252775/40‑1
                                              ATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAAT                                                    >  1:2239432/1‑40
                                                 AGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCA                  >  1:2559055/1‑71
                                                   TAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA                                                 <  1:1854067/38‑1
                                                   TAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA                                                 <  1:2978413/38‑1
                                                     AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCAT                 >  1:33263/1‑68
                                                     AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCA                  <  1:2568359/67‑1
                                                        TGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA                                            >  1:1243253/1‑38
                                                         GGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCA            >  1:2916961/1‑69
                                                             GCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCT                                 <  1:625234/44‑1
                                                              CATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATT      >  1:923049/1‑70
                                                                TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAA   <  1:2745783/71‑1
                                                                  ACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAT  <  1:1481662/70‑1
                                                                                                                                        
GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2412157‑2412225
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAT  <  W3110S.gb/3748807‑3748741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.