| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 41 (1.230) | 33/100 | NT | 95.3% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 2 (0.060) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCA > W3110S.gb/2412157‑2412295 | gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCa > 1:2761082/1‑70 (MQ=31) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa > 1:1269672/1‑70 (MQ=37) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa > 1:1867972/1‑70 (MQ=37) gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2150190/71‑1 (MQ=255) gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2920636/71‑1 (MQ=255) gAAGCCACTGGAGCACC‑CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2068874/70‑1 (MQ=255) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:1901810/1‑71 (MQ=255) cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACt < 1:566078/68‑1 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc > 1:359808/1‑61 (MQ=255) aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg < 1:1496616/71‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:67134/50‑1 (MQ=40) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:1069693/1‑70 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta > 1:290322/1‑71 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta < 1:248875/71‑1 (MQ=255) aaaaCACCATCATACACTAAATCTGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:1753950/71‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:1321695/51‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGTGACTCACATTGTTACGTta > 1:2078668/1‑70 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:1484233/71‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:108785/71‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta < 1:2692983/70‑1 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAt > 1:2693335/1‑59 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAt > 1:3062278/1‑59 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc > 1:220097/1‑49 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGc > 1:987880/1‑71 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:2892657/71‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:1080415/38‑1 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta < 1:701520/60‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCGCCAAAAAAGc > 1:2917014/1‑40 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCg < 1:1777874/56‑1 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc > 1:233608/1‑39 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCAGAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:1099156/1‑67 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:411634/1‑43 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGt < 1:2974041/46‑1 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat > 1:389590/1‑54 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:1145266/1‑70 (MQ=255) aaaTCATTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAt < 1:1211001/56‑1 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGtt > 1:402428/1‑51 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGcc > 1:2592017/1‑59 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca < 1:1599878/70‑1 (MQ=255) tCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca > 1:1089638/1‑68 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca < 1:2256324/36‑1 (MQ=255) gTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:3149082/1‑35 (MQ=255) aGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:1919662/1‑60 (MQ=255) aGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatata > 1:1889036/1‑71 (MQ=255) ggCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa > 1:2839779/1‑63 (MQ=255) gcagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:1351201/70‑1 (MQ=255) cagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:2465862/69‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAAt < 1:2036344/37‑1 (MQ=255) tCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAggg < 1:2854631/69‑1 (MQ=255) tCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGAt > 1:1788672/1‑71 (MQ=255) cACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca < 1:1310871/50‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatatat > 1:2434809/1‑59 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTAAGGGATCGCa < 1:2612944/71‑1 (MQ=255) | GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCA > W3110S.gb/2412157‑2412295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |