| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2267011 = | 89 (1.450) | 5 (0.090) | 3/90 | NT | 7.3% | intergenic (‑12/‑350) | thrU/coaA | tRNA‑Thr/pantothenate kinase |
| ? | minE | 2267032 = | 46 (0.840) | intergenic (‑33/‑329) | thrU/coaA | tRNA‑Thr/pantothenate kinase | |||||
CGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2267085‑2267011‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTATGCGACACGATGAAGAAA > minE/2267032‑2267099 CGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAA > 1:887552/1‑71 GCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAAT > 1:3858702/1‑71 AAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAAT > 1:1428804/1‑52 TCGCATGTCTCCATAGAATGCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTT > 1:1261328/1‑70 CGCATGTCTCCATAGAATGCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTA > 1:3576196/1‑71 CGCATGTCTCCATAGAATGCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTA > 1:3799964/1‑71 CGCATGTCTCCATAGAATGCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTA > 1:1058224/1‑71 GCATGTCTCCATAGAATGCGAGTTCATGCAACTAAAAAA > 1:802630/1‑39 ATGCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTATGCGACACGATGAAGA < 1:2638546/71‑1 ATGCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTA < 1:3196615/55‑1 ATGCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTA < 1:684916/55‑1 TGCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTATGCGACACGATGAAGAA < 1:3102872/71‑1 TGCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTA < 1:2722788/40‑1 TGCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTA < 1:1488008/40‑1 GCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTATGCGACACGATGAAGAAA > 1:3114291/1‑71 GCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTATGC > 1:3619389/1‑56 GCGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTATG > 1:1499539/1‑55 CGAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTA > 1:354510/1‑38 CGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2267085‑2267011‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgAGTTCATGCAACTAAAAAATTGCATAATTTGTTTTATTGGTCACATTTTATGCGACACGATGAAGAAA > minE/2267032‑2267099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |