| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1262029 = | 29 (0.560) | 4 (0.090) | 3/92 | NT | 13.5% | coding (20/1101 nt) | torY | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| ? | minE | 1262049 = | 25 (0.530) | intergenic (‑1/+387) | torY/cutC | TMAO reductase III (TorYZ), cytochrome c‑type subunit/copper homeostasis protein | |||||
TGTATATTTAATTATACAATGATTTCGGTGTCCAGTAATTTAATTAGAGGAATCTATGCGAGGGAAAAAACGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1262103‑1262029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTT > minE/1262049‑1262118 TGTATATTTAATTATACAATGATTTCGGTGTCCAGTAATTTAATTAGAGGAATCTATGCGAGGGAAAAAAC > 1:434113/1‑71 TTTAATTATACAATGATTTCGGTGTCCAGTAATTTAATTAGAGGAATCTATGCGAGGGAAAAAACG < 1:2953252/66‑1 GTAATTTAATTAGAGGAATCTATGCGAGGGAAAAAACG < 1:1774436/38‑1 TATGCGAGGGAAAAAACGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCGTTGTATATTTAAt > 1:124168/1‑69 TATGCGAGGGAAAAAACGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCGTTGTATATTTAAt > 1:2185947/1‑69 TGCGAGGGAAAAAACGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAA < 1:929246/68‑1 GGGAAAAAACGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATT > 1:1198570/1‑52 GCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCA > 1:3593909/1‑40 GCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCA > 1:61061/1‑40 CATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGC < 1:2851766/71‑1 CATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAA > 1:2901881/1‑67 ATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTA < 1:1105262/43‑1 TAGATTCCTCTAATTAAATTACTGGACACCGAGATCATTGTATAATT < 1:3424225/47‑1 TAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTT > 1:866965/1‑71 TAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCG < 1:3550653/68‑1 TAGATTACTCTAATTAAATTACTGGACACCGAAATCATT > 1:741521/1‑39 TGTATATTTAATTATACAATGATTTCGGTGTCCAGTAATTTAATTAGAGGAATCTATGCGAGGGAAAAAACGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1262103‑1262029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTT > minE/1262049‑1262118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |