| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1262029 = | 29 (0.560) | 4 (0.090) | 3/92 | NT | 13.5% | coding (20/1101 nt) | torY | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| ? | minE | 1262049 = | 25 (0.530) | intergenic (‑1/+387) | torY/cutC | TMAO reductase III (TorYZ), cytochrome c‑type subunit/copper homeostasis protein | |||||
TAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAA > minE/1261959‑1262097 | aagcggttaattcgttgtatatttaattatacaatgatttcggtgtccagtaatttaattagaggaatcta > 1:866965‑M1/71‑71 (MQ=255) gcggttaattcgttgtatatttaattatacaatgatttcggtgtccagtaatttaattagaggaatctATg < 1:2851766‑M1/3‑1 (MQ=255) aGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATg > 1:494975/1‑71 (MQ=255) cggttaattcgttgtatatttaattatacaatgatttcggtgtccagtaatttaattagaggaatcta < 1:3550653‑M1/1‑1 (MQ=255) aCTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGc > 1:560826/1‑70 (MQ=255) ttaattcgttgtatatttaattatacaatgatttcggtgtccagtaatttaattagaggaatctATg > 1:2901881‑M1/65‑67 (MQ=255) gcCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTccc < 1:2490659/71‑1 (MQ=255) cAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTc < 1:2442631/71‑1 (MQ=255) gCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCaa > 1:750627/1‑54 (MQ=255) gCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCaa > 1:2059284/1‑54 (MQ=255) gCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCg > 1:2053735/1‑70 (MQ=255) tttaattatacaatgatttcggtgtccagtaatttaattagaggaatctATGCGTTTTTTCCCTCGCa < 1:929246‑M1/19‑1 (MQ=255) attaaatatacaacgatttcggtgtccagtaatttaattagaggaatctATGCGTTTTTTCCCTCGCATa > 1:124168‑M1/50‑70 (MQ=255) attaaatatacaacgatttcggtgtccagtaatttaattagaggaatctATGCGTTTTTTCCCTCGCATa > 1:2185947‑M1/50‑70 (MQ=255) aaCCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCa > 1:2840877/1‑67 (MQ=255) aaCCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATa > 1:3022474/1‑69 (MQ=255) aCCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTTCCTCGCATAGAt > 1:2679248/1‑71 (MQ=255) aCCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGAt < 1:2181753/71‑1 (MQ=255) cccGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtttttt < 1:343060/57‑1 (MQ=255) aattatacaatgatctcggtgtccagtaatttaattagaggaatcta < 1:3424225‑M1/1‑1 (MQ=255) gccgccACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCct > 1:1719755/1‑71 (MQ=255) tacaatgatttcggtgtccagtaatttaattagaggaatctAt < 1:1105262‑M1/2‑1 (MQ=255) caccaACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtt > 1:565199/1‑45 (MQ=255) caccaACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTaat > 1:440402/1‑71 (MQ=255) aatgatttcggtgtccagtaatttaattagagtaatcta > 1:741521‑M1/39‑39 (MQ=255) aatgatttcggtgtccagtaatttaattagaggaatctATGCGTTTTTTccc > 1:1198570‑M1/39‑52 (MQ=255) tgatttcggtgtccagtaatttaattagaggaatctATGc > 1:61061‑M1/37‑40 (MQ=255) tgatttcggtgtccagtaatttaattagaggaatctATGc > 1:3593909‑M1/37‑40 (MQ=255) ccaaccaCAACCGCTATCAGCAAAAACAATAACCCAATGCGttttt > 1:2884534/1‑46 (MQ=255) ccaaccaCAACCGCTATCAGCAAAAACAATAACCCAATGCGatt > 1:1784970/1‑44 (MQ=255) ccaaccaCAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTaatta < 1:3451267/71‑1 (MQ=255) aaccaCAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTc > 1:2848548/1‑50 (MQ=255) accaCAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTc > 1:1211755/1‑59 (MQ=255) accaCAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTaattaaat > 1:1537780/1‑71 (MQ=255) acaACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTAc < 1:311882/71‑1 (MQ=255) caACCGCTATCAGCAAAAACAATAACCCAATGCGttttt < 1:2271202/39‑1 (MQ=255) caACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACt > 1:2628452/1‑71 (MQ=255) gCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGaca > 1:344736/1‑71 (MQ=255) cTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGaca > 1:1403515/1‑70 (MQ=255) aGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTaattaaa > 1:3384287/1‑55 (MQ=255) aGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGaaa > 1:3194509/1‑71 (MQ=255) aaaaCAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTg < 1:3635984/57‑1 (MQ=255) aaCAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTg < 1:827596/71‑1 (MQ=255) aaCAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTg < 1:2728966/71‑1 (MQ=255) aaCAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTg < 1:1431006/71‑1 (MQ=255) aaTAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGta > 1:2077031/1‑70 (MQ=255) aCCCAATTCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAAtt < 1:2307389/71‑1 (MQ=255) ccAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAAt < 1:1513615/57‑1 (MQ=255) aaTGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTaaa > 1:331292/1‑70 (MQ=255) aaTGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTaaa > 1:2986213/1‑70 (MQ=255) | TAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAA > minE/1261959‑1262097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |