| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2395347 = | 40 (0.770) | 4 (0.090) | 4/86 | NT | 11.0% | intergenic (+22/‑73) | rarD/yigG | predicted chloramphenical resistance permease/predicted inner membrane protein |
| ? | minE | 2395381 = | 31 (0.710) | intergenic (+56/‑39) | rarD/yigG | predicted chloramphenical resistance permease/predicted inner membrane protein | |||||
AAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2395419‑2395347‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatattGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATCTAAC > minE/2395381‑2395449 AAATTTTACATCCTTGTATGAGTCTCGGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATA > 1:3743719/1‑71AAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATA > 1:1191479/1‑71 AATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATAT > 1:594367/1‑71 TCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCA > 1:3246016/1‑45 AATATGCCCACTCTCATGCAAGAGTCGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTA < 1:1941961/67‑1 TATGCCCACTCTCATGCAAGAGTCGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATT > 1:566181/1‑70 CCCACTCTCATGCAAGAGTCGGCATATTGCCATGCTGACCGGAGACTCATACAAGG < 1:3122313/56‑1 ACTCTCATGCAAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGA > 1:2402901/1‑54 GGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAAC < 1:2710102/70‑1 GCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTT < 1:200499/51‑1 CATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATC > 1:1027012/1‑71 ATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATC > 1:1791559/1‑70 ATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTT < 1:3620936/59‑1 TATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCC < 1:149672/63‑1 TTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATCTAAC > 1:2058182/1‑71 TTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATCTAAC > 1:30174/1‑71 TTGCCATGCTGACCGGAGACTCATACAAGGATGTAAA < 1:2025385/37‑1 AAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2395419‑2395347‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatattGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATCTAAC > minE/2395381‑2395449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |