| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2395347 = | 40 (0.770) | 4 (0.090) | 4/86 | NT | 11.0% | intergenic (+22/‑73) | rarD/yigG | predicted chloramphenical resistance permease/predicted inner membrane protein |
| ? | minE | 2395381 = | 31 (0.710) | intergenic (+56/‑39) | rarD/yigG | predicted chloramphenical resistance permease/predicted inner membrane protein | |||||
GTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATCTAAC > minE/2395316‑2395449 | gTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATg < 1:2465030/71‑1 (MQ=255) aataaaaaataaaTATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGAc > 1:3532316/1‑71 (MQ=255) ataaaaaataaaTATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGAcc > 1:21921/1‑71 (MQ=255) ataaaaaataaaTATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGAcc > 1:1695454/1‑71 (MQ=255) aaaaataaaTATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGc > 1:2012247/1‑58 (MQ=255) aaaaataaaTATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGga < 1:412695/71‑1 (MQ=255) aaataaatATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGACATGCTGCCCGgaga > 1:3788761/1‑71 (MQ=255) aaataTATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCa > 1:2358229/1‑71 (MQ=255) aaataTATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCa > 1:2658623/1‑71 (MQ=255) aataTATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCa > 1:1825893/1‑70 (MQ=255) tatTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACaa < 1:2397361/71‑1 (MQ=255) ttCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAg < 1:2958080/70‑1 (MQ=255) tCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAgg < 1:937717/70‑1 (MQ=255) tCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGa > 1:2624459/1‑71 (MQ=255) cTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGa < 1:785075/70‑1 (MQ=255) aaaaaTATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGAt > 1:3756142/1‑67 (MQ=255) aaaTATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTaaaa > 1:3378898/1‑71 (MQ=255) aaaTATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTaaaa < 1:3194907/71‑1 (MQ=255) aatatgcccactctcatgcaagagtcggcatattGCCATGCTGACCGGAGACTCATACAAGGATGTa < 1:1941961‑M2/33‑1 (MQ=255) ATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAAtt > 1:594367‑M1/1‑71 (MQ=255) tatgcccactctcatgcaagagtcggcatattGCCATGCTGACCGGAGACTCATACAAGGATGTAAAAtt > 1:566181‑M2/33‑70 (MQ=255) TATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAAttt > 1:1191479‑M1/1‑71 (MQ=255) TATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCCGAGACTCATACAAGGATGTAAAAttt > 1:3743719‑M1/1‑71 (MQ=255) TGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGga > 1:3246016‑M1/1‑45 (MQ=255) cccactctcatgcaagagtcggcatattGCCATGCTGACCGGAGACTCATACAAgg < 1:3122313‑M2/28‑1 (MQ=255) gACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCa > 1:1370575/1‑47 (MQ=255) gACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCAt > 1:1536530/1‑48 (MQ=255) gACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCAt > 1:725650/1‑48 (MQ=255) actctcatgcaagagtgggcatattGCCATGCTGACCGGAGACTCATACAAGGa > 1:2402901‑M2/26‑54 (MQ=255) aCTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTAc > 1:3263616/1‑71 (MQ=255) ctctTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACg > 1:1763627/1‑71 (MQ=255) ctctTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACg > 1:3311988/1‑71 (MQ=255) tctTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTaaaa < 1:2852026/59‑1 (MQ=255) ctTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTa > 1:2550937/1‑62 (MQ=255) ttGCATGAGAGTGGGCATATTGCCATGCTGACCGgaga > 1:2471404/1‑38 (MQ=255) gCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGtat < 1:3755651/69‑1 (MQ=255) cATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATAtt < 1:986512/71‑1 (MQ=255) tGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAgg < 1:3441667/44‑1 (MQ=255) gagaGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTAt > 1:34799/1‑71 (MQ=255) gagaGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTAt > 1:236096/1‑71 (MQ=255) tgTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATccc < 1:3019437/70‑1 (MQ=255) agTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATcc > 1:1323078/1‑70 (MQ=255) tGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAAtt < 1:1718424/48‑1 (MQ=255) tGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAAtt < 1:3818882/48‑1 (MQ=255) ggcatattGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAAc < 1:2710102‑M2/62‑1 (MQ=255) gcatattGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGtt < 1:200499‑M2/44‑1 (MQ=255) catattGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATc > 1:1027012‑M2/7‑71 (MQ=255) atattGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATAttt < 1:3620936‑M2/54‑1 (MQ=255) atattGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATc > 1:1791559‑M2/6‑70 (MQ=255) tattGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATccc < 1:149672‑M2/59‑1 (MQ=255) ttGCCATGCTGACCGGAGACTCATACAAGGATGTaaa < 1:2025385‑M2/35‑1 (MQ=255) ttGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATCTAAc > 1:2058182‑M2/3‑71 (MQ=255) ttGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATCTAAc > 1:30174‑M2/3‑71 (MQ=255) gCCATGCTGACCGGAGACTCATACAAGGATGTAAAAtt > 1:2942244/1‑38 (MQ=255) gCCATGCTGACCGGAGACTCATACAAGGATGTAAAAt > 1:1310016/1‑37 (MQ=255) gCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGt < 1:1563553/48‑1 (MQ=255) gCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGt < 1:746022/48‑1 (MQ=255) gCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTa > 1:1639374/1‑55 (MQ=255) | GTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAATTTATGTTACGTATATTTATCCCAACATCTAAC > minE/2395316‑2395449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |