| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2395347 = | 40 (0.770) | 4 (0.090) | 4/86 | NT | 11.0% | intergenic (+22/‑73) | rarD/yigG | predicted chloramphenical resistance permease/predicted inner membrane protein |
| ? | minE | 2395381 = | 31 (0.710) | intergenic (+56/‑39) | rarD/yigG | predicted chloramphenical resistance permease/predicted inner membrane protein | |||||
ATTTTTGTGATGGATGCGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAA > minE/2395278‑2395416 | gttagatgttgggataaatatacgtaacataaattttacatccttgtatgagtctccggtcagcatggcaa > 1:2058182‑M1/70‑71 (MQ=255)gttagatgttgggataaatatacgtaacataaattttacatccttgtatgagtctccggtcagcatggcaa > 1:30174‑M1/70‑71 (MQ=255) tttttGTGATGGATGCGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGaaaaaa > 1:2492814/1‑70 (MQ=255) ttttGTGATGGATGCGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAat < 1:476039/70‑1 (MQ=255) tttGTGATGGATGCGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAata < 1:1806181/70‑1 (MQ=255) gatgttgggataaatatacgtaacataaattttacatccttgtatgagtctccggtcagcatggcAatat > 1:1791559‑M1/66‑70 (MQ=255) gatgttgggataaatatacgtaacataaattttacatccttgtatgagtctccggtcagcatggcAATATg > 1:1027012‑M1/66‑71 (MQ=255) tgtgATGGATGCGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATg < 1:2580490/70‑1 (MQ=255) tgATGGATGCGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGcc > 1:2242275/1‑70 (MQ=255) gttgggataaatatacgtaacataaattttacatccttgtatgagtctccggtcagcatggcAATATGcc < 1:2710102‑M1/8‑1 (MQ=255) tggatgCGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGAct > 1:2161889/1‑71 (MQ=255) gggataaatatacgtaacataaattttacatccttgtatgagtctccggtcagcatggcAata < 1:149672‑M1/4‑1 (MQ=255) atgCGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGActct > 1:593951/1‑70 (MQ=255) tgCGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTg > 1:312287/1‑71 (MQ=255) aaatatacgtaacataaattttacatccttgtatgagtctccggtcagcatggcAatat < 1:3620936‑M1/5‑1 (MQ=255) gcaTTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAatat > 1:3627268/3‑58 (MQ=255) cGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCttcat > 1:1705945/1‑68 (MQ=255) cGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCtt < 1:2991076/68‑1 (MQ=255) tttATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCAt > 1:1349395/1‑69 (MQ=255) ataCGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATgaga < 1:862820/70‑1 (MQ=255) taCGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATgaga < 1:844023/69‑1 (MQ=255) cGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTgg < 1:1208135/71‑1 (MQ=255) aacataaattttacatccttgtatgagtctccggtcagcatggcAATATGc < 1:200499‑M1/7‑1 (MQ=255) gCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATga < 1:61245/61‑1 (MQ=255) gTAGAACGTCCAAATAAAAAATAAATATATTCTGaaaaaa < 1:2273806/40‑1 (MQ=255) gTAGAACGTCCAAATAAAAAATAAATATATTCTGaaaaaa < 1:2616315/40‑1 (MQ=255) gTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCatat < 1:3177703/71‑1 (MQ=255) aattttacatccttgtatgagtctccggtcagcatggcAATATGCCGACTCTTGCATGAGAGTGGGCata > 1:566181‑M1/39‑70 (MQ=255) tttacatccttgtatgagtctccggtcagcatggcaa < 1:2025385‑M1/2‑1 (MQ=255) tacatccttgtatgagtctccggtcagcatggcAATATGCCGACTCTTGCATGAGAGTGGGCATAtt < 1:1941961‑M1/34‑1 (MQ=255) aCGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCat < 1:3565619/64‑1 (MQ=255) gTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATg < 1:2465030/71‑1 (MQ=255) tccttgtatgagtctccggtcagcatggcAATATGCCCACTCTTGCATGAGAGt > 1:2402901‑M1/30‑54 (MQ=255) ccttgtatgagtctccggtcagcatggcAATATGCCGACTCTTGCATGAGAGTggg < 1:3122313‑M1/28‑1 (MQ=255) aataaaaaataaaTATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGAc > 1:3532316/1‑71 (MQ=255) ataaaaaataaaTATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGAcc > 1:21921/1‑71 (MQ=255) ataaaaaataaaTATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGAcc > 1:1695454/1‑71 (MQ=255) aaaaataaaTATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGc > 1:2012247/1‑58 (MQ=255) aaaaataaaTATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGga < 1:412695/71‑1 (MQ=255) aaataaatATATTCTGAAAAAATATGCCGACTCTTGCATga < 1:2387958/41‑1 (MQ=255) aaataaatATATTCTGAAAAAATATGCCGACTCTTGCATga < 1:2383327/41‑1 (MQ=255) aaataaatATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGt < 1:3748440/45‑1 (MQ=255) aaataaatATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGACATGCTGCCCGgaga > 1:3788761/1‑71 (MQ=255) aataaataTATTCTGAAAAAATATGCCGACTCTTGCa > 1:897611/1‑37 (MQ=255) taaataTATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCata < 1:1980219/49‑1 (MQ=255) aaataTATTCTGAAAAAATATGCCGACTCTTGCATgag < 1:1580801/38‑1 (MQ=255) aaataTATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCa > 1:2658623/1‑71 (MQ=255) aaataTATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCa > 1:2358229/1‑71 (MQ=255) aataTATTCTGAAAAAATATGCCGACTCTTGCATGAGAGt < 1:560539/40‑1 (MQ=255) aataTATTCTGAAAAAATATGCCGACTCTTGCATGAGAGt < 1:1924516/40‑1 (MQ=255) aataTATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCa > 1:1825893/1‑70 (MQ=255) tatTCTGAAAAAATATGCCGACTCTTGCATGagag < 1:697279/35‑1 (MQ=255) tatTCTGAAAAAATATGCCGACTCTTGCATGagag < 1:701988/35‑1 (MQ=255) tatTCTGAAAAAATATGCCGACTCTTGCATGagag < 1:906139/35‑1 (MQ=255) tatTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACaa < 1:2397361/71‑1 (MQ=255) ttCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAg < 1:2958080/70‑1 (MQ=255) tCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAgg < 1:937717/70‑1 (MQ=255) tCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGa > 1:2624459/1‑71 (MQ=255) cTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGa < 1:785075/70‑1 (MQ=255) aaaaaTATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGAt > 1:3756142/1‑67 (MQ=255) aaaTATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTaaaa > 1:3378898/1‑71 (MQ=255) aaaTATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTaaaa < 1:3194907/71‑1 (MQ=255) | ATTTTTGTGATGGATGCGATTTATACGCAGCGTAGAACGTCCAAATAAAAAATAAATATATTCTGAAAAAATATGCCGACTCTTGCATGAGAGTGGGCATATTGCCATGCTGACCGGAGACTCATACAAGGATGTAAAA > minE/2395278‑2395416 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |