| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2403490 = | 77 (1.490) | 5 (0.100) | 3/96 | NT | 6.4% | coding (362/825 nt) | dapF | diaminopimelate epimerase |
| ? | minE | 2403514 = | 75 (1.540) | coding (338/825 nt) | dapF | diaminopimelate epimerase | |||||
CAGCACCGCCAACGGGCGGATGGTTCTGACCGTCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2403561‑2403490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTATTG > minE/2403514‑2403582 CAGCACCGCCAACGGGCGGATGGTTCTGACCGTCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAAC > 1:3323037/1‑71 AGCACCGCCAACGGGCGGATGGTTCTGACCGTCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAACC > 1:1502037/1‑71 AGCACCGCCAACGGGCGGATGGTTCTGACCGTCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAACC < 1:872269/71‑1 AGCACCGCCAACGGGCGGATGGTTCTGACCGTCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAACC < 1:453774/71‑1 AGCACCGCCAACGGGCGGATGGTTCTGACCGTCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAACC < 1:3204404/71‑1 AGCACCGCCAACGGGCGGATGGTTCTGACCGTCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAAC < 1:2037599/70‑1 AGCACCGCCAACGGGCGGATGGTTCTGACCGTCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAAC < 1:2510607/70‑1 ATGGTTCTGACCGTCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAA > 1:954242/1‑51 TCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAA > 1:1714732/1‑38 TCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAA > 1:902591/1‑38 TCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAA > 1:2790814/1‑38 TCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAA > 1:2123435/1‑38 GTCCGCGTAAATATGGGCGAACCAGATCATCATCGGTGACGGTCAGAACCAT < 1:2856879/52‑1 GTCCGCGTAAATATGGGCGAACCAGATCATCATCGGTGACGGTCAGAACCAT < 1:2092015/52‑1 CCGCGTAAATATGGGCGAACCAGATCATCATCGGTGACGGTCAG > 1:1902479/1‑44 CGCGTAAATATGGGCGAACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACG > 1:3199884/1‑71 CGCGTAAATATGGGCGAACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACG > 1:494727/1‑71 ACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTATT > 1:3116032/1‑71 ACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTATT > 1:2399129/1‑71 ACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTT > 1:1875111/1‑41 CCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTATTG < 1:884525/71‑1 CAGCACCGCCAACGGGCGGATGGTTCTGACCGTCACCGATGATGATCTGGTCCGCGTAAATATGGGCGAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2403561‑2403490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTATTG > minE/2403514‑2403582 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |