New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? minE 2403490 =77 (1.490)5 (0.100) 3/96 NT 6.4% coding (362/825 nt) dapF diaminopimelate epimerase
?minE 2403514 = 75 (1.540)coding (338/825 nt) dapF diaminopimelate epimerase

Only 100 of 109 total aligned reads displayed.

CCGCTTTGTTAGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTATTGGT  >  minE/2403446‑2403584
                                                                    |                                                                      
ccGCTTTGTTAGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAg                                                                       <  1:3665261/70‑1 (MQ=255)
ccGCTTTGTTAGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAg                                                                       <  1:596455/70‑1 (MQ=255)
 cGCTTTGTTAGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGat                                                                     <  1:279747/71‑1 (MQ=255)
  gCTTTGTTAGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGatc                                                                    <  1:2899249/71‑1 (MQ=255)
   cTTTGTTAGCGCGAAACGGCCCGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGatca                                                                   >  1:908266/1‑71 (MQ=255)
   cTTTGTTAGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGatca                                                                   >  1:1866809/1‑71 (MQ=255)
   cTTTGTTAGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGatca                                                                   >  1:2299305/1‑71 (MQ=255)
     ttGTTAGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGatcat                                                                  >  1:1188227/1‑70 (MQ=255)
      tGTTAGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGatcatca                                                                >  1:1626964/1‑71 (MQ=255)
      tGTTAGCGCGAAACGGCACGGCGGAAGGTTCGAAGATGGGTTCGCCCATATTTACGCGGACCAGatcatc                                                                 <  1:1745624/70‑1 (MQ=255)
        ttAGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGatcatcat                                                               <  1:1619384/70‑1 (MQ=255)
          aGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCgg                                                            >  1:3762412/1‑71 (MQ=255)
          aGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCg                                                             <  1:866983/70‑1 (MQ=255)
           gcgcGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGt                                                           <  1:1214474/71‑1 (MQ=255)
            cgcgAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGt                                                           >  1:2397004/1‑70 (MQ=255)
            cgcgAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGt                                                           >  1:2978046/1‑70 (MQ=255)
             gcgAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGa                                                         >  1:3785678/1‑71 (MQ=255)
               gAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACg                                                       >  1:3689926/1‑71 (MQ=255)
               gAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACg                                                       >  1:3405521/1‑71 (MQ=255)
               gAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACg                                                       >  1:3153111/1‑71 (MQ=255)
                aaaCGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACgg                                                      >  1:851805/1‑71 (MQ=255)
                aaaCGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACgg                                                      <  1:688511/71‑1 (MQ=255)
                aaaCGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACgg                                                      >  1:1444881/1‑71 (MQ=255)
                    ggcacggcGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAg                                                  <  1:3188236/71‑1 (MQ=255)
                    ggcacggcGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAg                                                  <  1:2872852/71‑1 (MQ=255)
                        cggcggAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAAcc                                              <  1:1646481/71‑1 (MQ=255)
                        cggcggAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAAcc                                              <  1:2514414/71‑1 (MQ=255)
                        cggcggAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAAc                                               >  1:1336136/1‑70 (MQ=255)
                          gcggAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCAt                                            <  1:1755624/71‑1 (MQ=255)
                             gAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGatcatcat                                                               <  1:1118210/49‑1 (MQ=255)
                             gAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGAGGGTCAGAACCATCCg                                         >  1:2008670/1‑71 (MQ=255)
                             gAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATcc                                          <  1:3725537/70‑1 (MQ=255)
                              aaGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGc                                        >  1:1606754/1‑71 (MQ=255)
                               aGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCg                                                             >  1:1936119/1‑49 (MQ=255)
                               aGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGcc                                       >  1:1608783/1‑71 (MQ=255)
                                ggTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGccc                                      >  1:1328001/1‑71 (MQ=255)
                                ggTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGccc                                      >  1:261370/1‑71 (MQ=255)
                                 gTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGccc                                      >  1:3600958/1‑70 (MQ=255)
                                  ttCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGcc                                       <  1:2213379/68‑1 (MQ=255)
                                  ttCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGcc                                       <  1:3220377/68‑1 (MQ=255)
                                  ttCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCg                                     <  1:596658/70‑1 (MQ=255)
                                  ttCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGt                                    >  1:1454224/1‑71 (MQ=255)
                                  ttCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGt                                    <  1:1214685/71‑1 (MQ=255)
                                  ttCGAAGTTGGGTTCGCCCATATTTACGCGGAACAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGt                                    <  1:2825601/71‑1 (MQ=255)
                                    cGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTg                                  >  1:1728987/1‑71 (MQ=255)
                                     gAAGTTGGGTTCGCCCATATTTACGCGGACCAGatcatca                                                                >  1:3641147/1‑40 (MQ=255)
                                     gAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTgg                                 <  1:2887097/71‑1 (MQ=255)
                                      aaGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGc                                <  1:2048331/71‑1 (MQ=255)
                                         ttGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGt                             >  1:470986/1‑71 (MQ=255)
                                           gggTTCGCCCATATTTACGCGGACCAGatcatcat                                                               <  1:1188055/35‑1 (MQ=255)
                                           gggTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCgg                              <  1:854830/68‑1 (MQ=255)
                                           gggTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGc                           >  1:2227860/1‑71 (MQ=255)
                                            GGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCt                          <  1:453774‑M1/71‑1 (MQ=255)
                                            GGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCt                          >  1:1502037‑M1/1‑71 (MQ=255)
                                            GGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCt                          <  1:872269‑M1/71‑1 (MQ=255)
                                            GGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCt                          <  1:3204404‑M1/71‑1 (MQ=255)
                                             gtccgcgtaaatatgggcgaaccAGATCATCATCGGTGACGGTCAGAACCAt                                            <  1:2092015‑M2/29‑1 (MQ=255)
                                             gtccgcgtaaatatgggcgaaccAGATCATCATCGGTGACGGTCAGAACCAt                                            <  1:2856879‑M2/29‑1 (MQ=255)
                                             GTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCt                          <  1:2510607‑M1/70‑1 (MQ=255)
                                             GTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCt                          <  1:2037599‑M1/70‑1 (MQ=255)
                                             GTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTg                         >  1:3323037‑M1/1‑71 (MQ=255)
                                              TTCGCCCATATTTACGCGGACCAGATCATCATCGGTGa                                                         >  1:902591‑M1/1‑38 (MQ=255)
                                              TTCGCCCATATTTACGCGGACCAGATCATCATCGGTGa                                                         >  1:1714732‑M1/1‑38 (MQ=255)
                                              TTCGCCCATATTTACGCGGACCAGATCATCATCGGTGa                                                         >  1:2790814‑M1/1‑38 (MQ=255)
                                              TTCGCCCATATTTACGCGGACCAGATCATCATCGGTGa                                                         >  1:2123435‑M1/1‑38 (MQ=255)
                                              TTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCAt                                            >  1:954242‑M1/1‑51 (MQ=255)
                                               tCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGAc                       >  1:3002617/1‑71 (MQ=255)
                                               tCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGAc                       >  1:601153/1‑71 (MQ=255)
                                               ccgcgtaaatatgggcgaaccAGATCATCATCGGTGACGGTCAg                                                  >  1:1902479‑M2/22‑44 (MQ=255)
                                                cgcgtaaatatgggcgaaccAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGAcg                      >  1:494727‑M2/21‑71 (MQ=255)
                                                cGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCTTTGGCg                               >  1:811684/1‑62 (MQ=255)
                                                cGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCg                               >  1:2522229/1‑62 (MQ=255)
                                                cGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGc                           >  1:1118516/1‑66 (MQ=255)
                                                  cccATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGAcgcg                    <  1:3853347/71‑1 (MQ=255)
                                                   ccATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCgg                   <  1:1006792/71‑1 (MQ=255)
                                                     atatTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATcc                                          >  1:414702/1‑46 (MQ=255)
                                                     atatTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGat                 <  1:2779121/71‑1 (MQ=255)
                                                     atatTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGat                 <  1:2050038/71‑1 (MQ=255)
                                                     atatTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGat                 <  1:1670073/71‑1 (MQ=255)
                                                     atatTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGa                  >  1:2622681/1‑70 (MQ=255)
                                                     atatTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGa                  >  1:418538/1‑70 (MQ=255)
                                                     atatTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGa                  >  1:2103326/1‑70 (MQ=255)
                                                      tatTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGata                >  1:1025544/1‑71 (MQ=255)
                                                        tttACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGatat               <  1:548003/70‑1 (MQ=255)
                                                        tttACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGatat               <  1:2644535/70‑1 (MQ=255)
                                                        tttACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATc              <  1:1483316/71‑1 (MQ=255)
                                                         ttACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGtt                                   >  1:812307/1‑49 (MQ=255)
                                                         ttACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCa             >  1:1545249/1‑71 (MQ=255)
                                                          tACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCg                                         >  1:946282/1‑42 (MQ=255)
                                                          tACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCAc            >  1:1571890/1‑71 (MQ=255)
                                                           aCGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCAc            >  1:2588740/1‑70 (MQ=255)
                                                            cgcgGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCa             >  1:124201/1‑68 (MQ=255)
                                                               ggACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTa       <  1:3131660/71‑1 (MQ=255)
                                                                gACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTAt      <  1:291312/71‑1 (MQ=255)
                                                                gACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTAt      <  1:1074691/71‑1 (MQ=255)
                                                                 accAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGtt                                   >  1:1875111‑M2/4‑41 (MQ=255)
                                                                 accAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTAtt     >  1:3116032‑M2/4‑71 (MQ=255)
                                                                  ccAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTATTg    <  1:884525‑M2/69‑1 (MQ=255)
                                                                    aGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTATTGGt  <  1:1104802/71‑1 (MQ=255)
                                                                    aGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTATTGGt  <  1:1084341/71‑1 (MQ=255)
                                                                    |                                                                      
CCGCTTTGTTAGCGCGAAACGGCACGGCGGAAGGTTCGAAGTTGGGTTCGCCCATATTTACGCGGACCAGATCATCATCGGTGACGGTCAGAACCATCCGCCCGTTGGCGGTGCTGACGCGGATATCACGCTTATTGGT  >  minE/2403446‑2403584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.