| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2776814 = | 44 (0.850) | 4 (0.090) | 4/86 | NT | 11.7% | coding (872/2187 nt) | arpA | regulator of acetyl CoA synthetase |
| ? | minE | 2776838 = | 23 (0.530) | coding (848/2187 nt) | arpA | regulator of acetyl CoA synthetase | |||||
GTTTATGATCCTAATGTAACTAACGATAAAATAAGAATTATGAGCGAAAGCAAAGAGAATATTAAACACTATTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2776890‑2776814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattctctTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGAAACCACGT > minE/2776838‑2776901 GTTTATGATCCTAATGTAACTAACGATAAAATAAGAATTATGAGCGAAAGCAAAGAGAATATTAAACACTA < 1:637387/71‑1 TATGATCCTAATGTAACTAACGATAAAATAAGAATTATGAGCGAAAGCAAAGAGAATATTAACCACTATTC > 1:165153/1‑71 TATGATCCTAATGTAACTAACGATAAAATAAGAATTATGAGCGAAAGCAAAGAGAATATTAAACACTATT < 1:798570/70‑1 ATCCTAATGTAACTAACGATAAAATAAGAATTATGAGCGAAAGCAAAGAGAATATTAAACACTATTCTCT < 1:1788804/70‑1 ATCCTAATGTAACTAACGATAAAATAAGAATTATGAGCGAAAGCAAAGAGAATATTAAACACTATTCTCT > 1:2090593/1‑70 AATGTAACTAACGATAAAATAAGAATTATGAGCGAAAGCAAAGAGAATATTAAACACTATTCTCT < 1:3099187/65‑1 tATAAAATAAGAATTATGAGCGAAAGCAAAGAGAATATTAAACACTATT < 1:3376124/48‑1 AGCAAAGAGAATATTAAACACTATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACAT > 1:2725098/1‑69 AAAGAGAATATTAAACACTATTCTCTTTGCTTTCGCTCA < 1:3923123/39‑1 GAATATTAAACACTATTCTCTTTGCTTTCGCTCATAATTCTTATTTT > 1:521954/1‑47 AATATTAAACACTATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATA < 1:3179802/70‑1 TATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGAAACCACG > 1:3251479/1‑71 TATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTT > 1:153028/1‑44 TTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGAAACCACGT > 1:989978/1‑70 TTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGAAACCACGT < 1:1779285/70‑1 TTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCG > 1:1655069/1‑56 TTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGG < 1:3136558/45‑1 GTTTATGATCCTAATGTAACTAACGATAAAATAAGAATTATGAGCGAAAGCAAAGAGAATATTAAACACTATTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2776890‑2776814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattctctTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGAAACCACGT > minE/2776838‑2776901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |