| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2776814 = | 44 (0.850) | 4 (0.090) | 4/86 | NT | 11.7% | coding (872/2187 nt) | arpA | regulator of acetyl CoA synthetase |
| ? | minE | 2776838 = | 23 (0.530) | coding (848/2187 nt) | arpA | regulator of acetyl CoA synthetase | |||||
ATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGAAACCACGT > minE/2776768‑2776901 | aTTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCtt < 1:2074845/71‑1 (MQ=255) ttGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCttt > 1:3706259/1‑70 (MQ=255) ttGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCttt > 1:1434652/1‑70 (MQ=255) ttGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCttt > 1:1488058/1‑70 (MQ=255) ttGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCttt > 1:3169502/1‑70 (MQ=255) ccATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCttt < 1:3454260/71‑1 (MQ=255) atgtaactaacgataaaataagaattatgagcgaaagcaaAGAGAATAGTGTTTAATATTCTCTTTGCt > 1:2725098‑M1/41‑69 (MQ=255) aTTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTc > 1:783819/1‑70 (MQ=255) aTTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCg > 1:1632377/1‑71 (MQ=255) ttCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCt > 1:523533/1‑71 (MQ=255) ttCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCt > 1:3369441/1‑71 (MQ=255) ttCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCt > 1:1955161/1‑71 (MQ=255) tCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCtt > 1:1074146/1‑60 (MQ=255) tCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTTCTTTCGCt > 1:3078908/1‑70 (MQ=255) tCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCt > 1:3352575/1‑70 (MQ=255) cAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTc < 1:2067090/70‑1 (MQ=255) gaggCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCtt > 1:1369702/1‑56 (MQ=255) tataATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCt > 1:1731285/1‑70 (MQ=255) taATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTAt > 1:3778572/1‑71 (MQ=255) aTCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTAtt < 1:3148826/70‑1 (MQ=255) aCATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATc > 1:463229/1‑71 (MQ=255) aCATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATc > 1:1831241/1‑71 (MQ=255) cATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATc < 1:1861835/70‑1 (MQ=255) aTTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCgt > 1:612490/1‑71 (MQ=255) tgagcgaaagcaaAGAGAATAGTGTTTAATATTCTCttt < 1:3923123‑M1/26‑1 (MQ=255) aaaTCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTAtt < 1:1130057/57‑1 (MQ=255) aTCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACAt < 1:1109048/71‑1 (MQ=255) tCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACAtt < 1:2161853/71‑1 (MQ=255) agcaaagagaatattaaacactattctctTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACAt > 1:2725098‑M2/30‑69 (MQ=255) tCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGa < 1:3912319/71‑1 (MQ=255) tCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGa < 1:185621/71‑1 (MQ=255) aaagagaatattaaacactattctctTTGCTTTCGCTCa < 1:3923123‑M2/13‑1 (MQ=255) AGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACAtt < 1:3099187‑M1/65‑1 (MQ=255) AGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGAt < 1:1788804‑M1/70‑1 (MQ=255) AGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGAt > 1:2090593‑M1/1‑70 (MQ=255) gaatattaaacactattctctTTGCTTTCGCTCATAATTCTTAtttt > 1:521954‑M2/22‑47 (MQ=255) GAATAGTGGTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATa > 1:165153‑M1/1‑71 (MQ=255) aatattaaacactattctctTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATa < 1:3179802‑M2/50‑1 (MQ=255) AATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTata < 1:3376124‑M1/49‑2 (MQ=255) AATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATa < 1:798570‑M1/70‑1 (MQ=255) TAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAAc < 1:637387‑M1/71‑1 (MQ=255) tgtTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGa < 1:103898/71‑1 (MQ=255) tgtTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGa < 1:558701/71‑1 (MQ=255) tttAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCg < 1:3507420/68‑1 (MQ=255) tttAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGaaa > 1:1193101/1‑71 (MQ=255) tAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGaa > 1:2220319/1‑68 (MQ=255) tAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGAAAc > 1:1358411/1‑70 (MQ=255) aaTATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATa > 1:3554724/1‑60 (MQ=255) tattctctTTGCTTTCGCTCATAATTCTTATTTTATCgttagtt > 1:153028‑M2/9‑44 (MQ=255) tattctctTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGAAACCACg > 1:3251479‑M2/9‑71 (MQ=255) ttctctTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGAAACCACGt < 1:1779285‑M2/64‑1 (MQ=255) ttctctTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGAAACCACGt > 1:989978‑M2/7‑70 (MQ=255) tTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAgg < 1:3136558‑M2/44‑1 (MQ=255) tTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCg > 1:1655069‑M2/2‑56 (MQ=255) | ATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGATCATAAACCGAAACCACGT > minE/2776768‑2776901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |