| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2776814 = | 44 (0.850) | 4 (0.090) | 4/86 | NT | 11.7% | coding (872/2187 nt) | arpA | regulator of acetyl CoA synthetase |
| ? | minE | 2776838 = | 23 (0.530) | coding (848/2187 nt) | arpA | regulator of acetyl CoA synthetase | |||||
AACAGATTGATTAATAACATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGAT > minE/2776744‑2776883 | aaCAGATTGATTAATAACATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCa < 1:918543/71‑1 (MQ=255) attgattAATAACATGATCATTTGACCATTTGAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGaa > 1:766260/1‑71 (MQ=255) acgtggtttcggtttatgatcctaatgtaactaacgataaaataagaattatgagcgaaagcaaAGAGaa > 1:989978‑M1/65‑70 (MQ=255) acgtggtttcggtttatgatcctaatgtaactaacgataaaataagaattatgagcgaaagcaaAGAGaa < 1:1779285‑M1/6‑1 (MQ=255) cgtggtttcggtttatgatcctaatgtaactaacgataaaataagaattatgagcgaaagcaaAGAGAATa > 1:3251479‑M1/64‑71 (MQ=255) taataaCATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAgtg < 1:3479053/70‑1 (MQ=255) aataaCATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGtt > 1:498175/1‑71 (MQ=255) ataaCATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGttt < 1:3941169/71‑1 (MQ=255) ataaCATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGttt < 1:2118789/71‑1 (MQ=255) ataaCATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGtt < 1:58334/70‑1 (MQ=255) taaCATGATCATTTGACCATTTCAGGAGGCTATAATCTTCATTCATAAAATCCATCAGAGAATAGTGttt < 1:3654512/70‑1 (MQ=255) taaCATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCag < 1:3545272/58‑1 (MQ=255) taaCATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCag < 1:2899173/58‑1 (MQ=255) cggtttatgatcctaatgtaactaacgataaaataagaattatgagcgaaagcaaa > 1:1655069‑M1/56‑56 (MQ=255) aCATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTaa > 1:304215/1‑70 (MQ=255) aCATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTaa > 1:2316549/1‑70 (MQ=255) aCATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTaa > 1:1914881/1‑70 (MQ=255) aCATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAat < 1:293459/71‑1 (MQ=255) cATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATa < 1:2054614/61‑1 (MQ=255) cATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAata < 1:1615373/71‑1 (MQ=255) tGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAatat > 1:1561558/1‑70 (MQ=255) tatgatcctaatgtaactaacgataaaataagaattatgagcgaaagcaaAGAGAATAGTGTTTAATAtt < 1:3179802‑M1/20‑1 (MQ=255) tCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATtctc < 1:3179486/71‑1 (MQ=255) tCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATtctc < 1:1966528/71‑1 (MQ=255) aTTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCtt < 1:2074845/71‑1 (MQ=255) tttGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTAAATATTctct < 1:2520058/69‑1 (MQ=255) ttGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCttt > 1:3169502/1‑70 (MQ=255) ttGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCttt > 1:3706259/1‑70 (MQ=255) ttGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCttt > 1:1488058/1‑70 (MQ=255) ttGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCttt > 1:1434652/1‑70 (MQ=255) cctaatgtaactaacgataaaataagaattatgagcgaaagcaaa < 1:3136558‑M1/1‑1 (MQ=255) ccATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCttt < 1:3454260/71‑1 (MQ=255) atgtaactaacgataaaataagaattatgagcgaaagcaaAGAGAATAGTGTTTAATATTCTCTTTGCt > 1:2725098‑M1/41‑69 (MQ=255) aTTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTc > 1:783819/1‑70 (MQ=255) aTTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCg > 1:1632377/1‑71 (MQ=255) ttCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCt > 1:3369441/1‑71 (MQ=255) ttCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCt > 1:523533/1‑71 (MQ=255) ttCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCt > 1:1955161/1‑71 (MQ=255) aactaacgataaaataagaattatgagcgaaagcaaAGAGAATa > 1:153028‑M1/37‑44 (MQ=255) tCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCtt > 1:1074146/1‑60 (MQ=255) tCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTTCTTTCGCt > 1:3078908/1‑70 (MQ=255) tCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCt > 1:3352575/1‑70 (MQ=255) cAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTc < 1:2067090/70‑1 (MQ=255) gaggCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCtt > 1:1369702/1‑56 (MQ=255) tataATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCt > 1:1731285/1‑70 (MQ=255) aaaataagaattatgagcgaaagcaaAGAGAATAGTGTTTAATATtc > 1:521954‑M1/27‑47 (MQ=255) taATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTAt > 1:3778572/1‑71 (MQ=255) aTCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTAtt < 1:3148826/70‑1 (MQ=255) aCATTCATAAAATCCATCAGAGAATAGTGTTTAATATtc < 1:1191558/39‑1 (MQ=255) aCATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATc > 1:463229/1‑71 (MQ=255) aCATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATc > 1:1831241/1‑71 (MQ=255) cATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATc < 1:1861835/70‑1 (MQ=255) aTTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCgt > 1:612490/1‑71 (MQ=255) tgagcgaaagcaaAGAGAATAGTGTTTAATATTCTCttt < 1:3923123‑M1/26‑1 (MQ=255) aaaTCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTAtt < 1:1130057/57‑1 (MQ=255) aTCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACAt < 1:1109048/71‑1 (MQ=255) tCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACAtt < 1:2161853/71‑1 (MQ=255) tCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGa < 1:185621/71‑1 (MQ=255) tCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGa < 1:3912319/71‑1 (MQ=255) AGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACAtt < 1:3099187‑M1/65‑1 (MQ=255) AGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGAt > 1:2090593‑M1/1‑70 (MQ=255) AGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGAt < 1:1788804‑M1/70‑1 (MQ=255) | AACAGATTGATTAATAACATGATCATTTGACCATTTCAGGAGGCTATAATCTACATTCATAAAATCCATCAGAGAATAGTGTTTAATATTCTCTTTGCTTTCGCTCATAATTCTTATTTTATCGTTAGTTACATTAGGAT > minE/2776744‑2776883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |