| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 558469 | 19 (0.370) | 12 (0.240) +GT |
7/98 | NT | 29.7% | intergenic (+19/‑285) | iaaA/cmr | L‑asparaginase/multidrug efflux system protein |
| ? | minE | 1659293 = | 40 (0.770) | coding (1493/1542 nt) | ppx | exopolyphosphatase | |||||
GCCAACCACCGGTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGT > minE/558399‑558536 | gCCAACCACCGGTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGtaat < 1:476075/71‑1 (MQ=255) cAACCACCGGTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgt > 1:1755749‑M1/1‑69 (MQ=255) aaCCACCGGTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtg < 1:1151814‑M1/71‑4 (MQ=255) ccaccGGTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATAACtt < 1:1846387/71‑1 (MQ=255) ccaccGGTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATAACtt < 1:133009/71‑1 (MQ=255) caccGGTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtgctg < 1:3078346‑M1/71‑7 (MQ=255) accGGTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtgctgg > 1:463477‑M1/1‑64 (MQ=255) ccGGTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtgctggc > 1:2855820‑M1/1‑63 (MQ=255) ccGGTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATAACTTccc < 1:1589493/71‑1 (MQ=255) ggTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtgctggcgg < 1:1854703‑M1/71‑11 (MQ=255) ggTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtgctggcg < 1:2402900‑M1/70‑10 (MQ=255) gTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtgctggcggt < 1:1380310‑M1/71‑12 (MQ=255) aCCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATAACTTCCCGACGCAAAg > 1:2784089/1‑71 (MQ=255) ccGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtgctggcggttgaaaat < 1:1013185‑M1/71‑19 (MQ=255) ccGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtgctggcggttgaaaa < 1:2357089‑M1/70‑18 (MQ=255) ccGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtgctggcggttgaaaa < 1:3081445‑M1/70‑18 (MQ=255) ccGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtgctggc < 1:2189083‑M1/61‑9 (MQ=255) cGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATgtgctggcggttgaaaatc < 1:771458‑M1/71‑20 (MQ=255) aGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATAACTTCCCGACGCAAAGTg > 1:882622/1‑63 (MQ=255) ggggACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATAACTTCCCGACGCAAAGTGATTAAAAgg < 1:416270/71‑1 (MQ=255) acCGTTGCCACACAGTGATGAACTTGATGCCGGTAATAACTTCCCg < 1:3939292/46‑1 (MQ=255) cGTTGCCACACAGTGATGAACTTGATGCCGGTAATAACTTCCCGa > 1:3339740/1‑45 (MQ=255) cGTTGCCACACAGTGATGAACTTGATGCCGGTAATAACTTCCCGAc > 1:2039424/1‑46 (MQ=255) gTTGCCACACAGTGATGAACTTGATGCCGGTAATAACTTCCCGACGCAAAGTGAATAAAAggg < 1:2445905/63‑1 (MQ=255) gCCACACAGTGATGAACTTGATGCCGGTAATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAg > 1:1777556/1‑71 (MQ=255) cacacaGTGATGAACTTGATGCCGGTAATgtgctggcggttgaaaa < 1:2785222‑M1/46‑18 (MQ=255) cacacaGTGATGAACTTGATGCCGGTAATgtgctggcggttgaaaa < 1:228236‑M1/46‑18 (MQ=255) acaGTGATGAACTTGATGCCGGTAATAACTTCCCg < 1:806799/35‑1 (MQ=255) acaGTGATGAACTTGATGCCGGTAATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAg > 1:1778905/1‑71 (MQ=255) gatgaACTTGATGCCGGTAATgtgctggcggttgaaaat < 1:2955357‑M1/39‑19 (MQ=255) atgaACTTGATGCCGGTAATAACTTCCCGACGCaa > 1:1693152/1‑35 (MQ=255) atgaACTTGATGCCGGTAATAACTTCCCGACGCAAAGTGATCAAAAGGGAGCCAATACAGGCAAGTCGTTg < 1:200867/71‑1 (MQ=255) gaACTTGATGCCGGTAATAACTTCCCGACGCAAAGTGATTaaaa > 1:3261058/1‑44 (MQ=255) gaACTTGATGCCGGTAATAACTTCCCGACGCAAAGTGATTaaaa > 1:1810428/1‑44 (MQ=255) aaCTTGATGCCGGTAATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAAt > 1:3868513/1‑53 (MQ=255) aaCTTGATGCCGGTAATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAAt > 1:1400995/1‑53 (MQ=255) tGATGCCGGTAATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGCCAAGTCGTTGAGAATa > 1:3812885/1‑70 (MQ=255) gATGCCGGTAATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATa > 1:906565/1‑69 (MQ=255) agcataaCTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAgg > 1:2416371/4‑71 (MQ=255) agcataaCTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAgg > 1:2411641/4‑71 (MQ=255) gcataaCTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTgag > 1:2370239/3‑57 (MQ=255) cataaCTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAg > 1:456599/2‑43 (MQ=255) cataaCTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAg > 1:1411355/2‑43 (MQ=255) cataaCTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGt > 1:3732851/2‑70 (MQ=255) aataaCTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAAt < 1:3795910/59‑1 (MQ=255) aataaCTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGt > 1:3939805/1‑70 (MQ=255) | GCCAACCACCGGTATCTACCGTGAAAAAGGGGACACCGTTGCCACACAGTGATGAACTTGATGCCGGTAATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGT > minE/558399‑558536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |