| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1262440 | 37 (0.710) | 5 (0.110) | 3/88 | NT | 13.3% | coding (743/747 nt) | cutC | copper homeostasis protein |
| ? | minE | = 1262456 | 33 (0.740) | coding (727/747 nt) | cutC | copper homeostasis protein | |||||
TGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAAT > minE/1262370‑1262509 | tGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATT > 1:1458116‑M1/1‑71 (MQ=255) tGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTg < 1:1823197/70‑1 (MQ=255) tGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTg > 1:2927767/1‑70 (MQ=255) aaTTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCt < 1:1184449/71‑1 (MQ=255) aTTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCt < 1:1231864/70‑1 (MQ=255) aTTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCt > 1:1642609/1‑70 (MQ=255) aTTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTg < 1:3447671/71‑1 (MQ=255) tGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGAt > 1:1686783/1‑71 (MQ=255) gCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATg > 1:1277310/1‑71 (MQ=255) ggggCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTgaacgccat < 1:3825001‑M1/67‑10 (MQ=255) ggggCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTgaacgccat < 1:3405871‑M1/67‑10 (MQ=255) ggggCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCg < 1:516637/71‑1 (MQ=255) ggCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATT > 1:1001673‑M1/1‑56 (MQ=255) ccTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTgg > 1:2910249/1‑57 (MQ=255) cTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaa < 1:3746859‑M2/71‑3 (MQ=255) cTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaa < 1:3071671‑M2/71‑3 (MQ=255) tGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaat < 1:515469‑M2/71‑4 (MQ=255) gTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGc < 1:2976384/54‑1 (MQ=255) gTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaatg > 1:2468778‑M2/1‑66 (MQ=255) gTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATCTGGCCTGATGGCGTTCaat > 1:1121318‑M2/1‑66 (MQ=255) tACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCt < 1:903147/55‑1 (MQ=255) gAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTc < 1:933358/70‑1 (MQ=255) gcaagcaTCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtt > 1:694154/1‑71 (MQ=255) caagcaTCATATTGGGCGACATGATGCAACGGTAAAAATCATT > 1:1441603‑M1/1‑43 (MQ=255) gcaTCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcat > 1:1328723/1‑71 (MQ=255) atcatATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcattt < 1:1895199/71‑1 (MQ=255) tcatATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcattt > 1:2587083/1‑70 (MQ=255) tcatATTGGGCGACATGATGCAACGGTAAAAATCATT > 1:1648598‑M1/1‑37 (MQ=255) atatTGGGCGACATGATGCAACGGTAAAAATCATTgaacgccatcaggccaaatgat > 1:3715181‑M1/1‑35 (MQ=255) atatTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcatttca > 1:2926258/1‑70 (MQ=255) ttttGGGCGACATGATGCAACGGTAAAAATCATTTTGCCTg < 1:2542740/39‑1 (MQ=38) tatTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTg < 1:1091686/41‑1 (MQ=255) tatTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTg < 1:647998/41‑1 (MQ=255) ttGGGCGACATTATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCa > 1:3230183‑M2/1‑48 (MQ=255) ttGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCaa < 1:74343/71‑1 (MQ=255) tGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAg > 1:1839376/1‑67 (MQ=255) gCGACATGATGCAACGGTAAAAATCATTgaacgccatcaggccaaatga < 1:716815‑M1/49‑22 (MQ=255) gCGACATGATGCAACGGTAAAAATCATTgaacgccatcaggccaaatga < 1:1403283‑M1/49‑22 (MQ=255) gCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAAcc > 1:2181507/1‑69 (MQ=255) cGACATGATGCAACGGTAAAAATCATTTGGCCTGTTGGCTTTCAATGATTCCTTTCATTTCAGCAAccgcc < 1:1644140/71‑1 (MQ=255) aCATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACcgccgc > 1:2338814/1‑71 (MQ=255) aCATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACcgccgc > 1:3150995/1‑71 (MQ=255) cATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAg < 1:3213087/60‑1 (MQ=255) tgatgCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCa > 1:210589/1‑60 (MQ=255) tgatgCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCa > 1:2200185/1‑60 (MQ=255) tgatgCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGcccc > 1:199277/1‑71 (MQ=255) tgCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaatgat < 1:3883401‑M2/41‑7 (MQ=255) gCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttca < 1:3738154/48‑1 (MQ=255) cAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCt < 1:3690498/70‑1 (MQ=255) cAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTa > 1:2125172/1‑71 (MQ=255) aCGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcattt < 1:1274687/48‑1 (MQ=255) ggTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcatttca > 1:3637465/1‑48 (MQ=255) ggTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcatttca > 1:2659381/1‑48 (MQ=255) aaaaaTCATTTGGCCTGATGGCGTTCAATGATTCCtttcatttca > 1:1531419/1‑45 (MQ=255) aaTCATTTGGCCTGATGGCGTTCAATGATTCCttacattt < 1:3645652/40‑1 (MQ=255) aaTCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAAcg < 1:2503794/71‑1 (MQ=255) aTCATTgaacgccatcaggccaaatgatttttaccgttgca < 1:3883401‑M1/41‑36 (MQ=255) aTCATTTGGCCTGATGGCGTTCaatgatttttaccgttgcatcatgtcgcccaatat > 1:3715181‑M2/1‑22 (MQ=255) aTCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAAcgc > 1:562391/1‑71 (MQ=255) tCATTTGGCCTGATGGCGTTCaatgatttttaccgttgcatcatgtcgc < 1:1403283‑M2/49‑29 (MQ=255) tCATTTGGCCTGATGGCGTTCaatgatttttaccgttgcatcatgtcgc < 1:716815‑M2/49‑29 (MQ=255) cATTgaacgccatcaggccaaatgatttttaccgttgcatcatgtcgcccaatatgatgcttgctcgtac > 1:2468778‑M1/1‑4 (MQ=255) aTTgaacgccatcaggccagatgatttttaccgttgcatcatgtcgcccaatatgatgcttgctcgtac > 1:1121318‑M1/1‑3 (MQ=255) aTTgaacgccatcaggccaaatgatttttaccgttgcatcatgtcgcccaatatgatgcttgctcgtacca < 1:515469‑M1/71‑69 (MQ=255) aTTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGaa < 1:1391427/71‑1 (MQ=255) ttgaacgccatcaggccaaatgatttttaccgttgcatcatgtcgcccaatatgatgcttgctcgtaccag < 1:3071671‑M1/71‑70 (MQ=255) ttgaacgccatcaggccaaatgatttttaccgttgcatcatgtcgcccaatatgatgcttgctcgtaccag < 1:3746859‑M1/71‑70 (MQ=255) tgaacgccatcaggccaaatgatttttaccgttgcataatgtcgcccaa > 1:3230183‑M1/1‑1 (MQ=255) | TGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAAT > minE/1262370‑1262509 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |