| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1262440 | 37 (0.710) | 5 (0.110) | 3/88 | NT | 13.3% | coding (743/747 nt) | cutC | copper homeostasis protein |
| ? | minE | = 1262456 | 33 (0.740) | coding (727/747 nt) | cutC | copper homeostasis protein | |||||
CTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTC > minE/1262388‑1262525 | cTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaa < 1:3746859‑M2/71‑3 (MQ=255)cTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaa < 1:3071671‑M2/71‑3 (MQ=255) tGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaat < 1:515469‑M2/71‑4 (MQ=255) gTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaatg > 1:2468778‑M2/1‑66 (MQ=255) gTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATCTGGCCTGATGGCGTTCaat > 1:1121318‑M2/1‑66 (MQ=255) gAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTc < 1:933358/70‑1 (MQ=255) gcaagcaTCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtt > 1:694154/1‑71 (MQ=255) gcaTCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcat > 1:1328723/1‑71 (MQ=255) atcatATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcattt < 1:1895199/71‑1 (MQ=255) tcatATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcattt > 1:2587083/1‑70 (MQ=255) atatTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcatttca > 1:2926258/1‑70 (MQ=255) ttGGGCGACATTATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCa > 1:3230183‑M2/1‑48 (MQ=255) ttGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCaa < 1:74343/71‑1 (MQ=255) tGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAg > 1:1839376/1‑67 (MQ=255) gCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAAcc > 1:2181507/1‑69 (MQ=255) cGACATGATGCAACGGTAAAAATCATTTGGCCTGTTGGCTTTCAATGATTCCTTTCATTTCAGCAAccgcc < 1:1644140/71‑1 (MQ=255) aCATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACcgccgc > 1:3150995/1‑71 (MQ=255) aCATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACcgccgc > 1:2338814/1‑71 (MQ=255) cATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAg < 1:3213087/60‑1 (MQ=255) tgatgCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCa > 1:2200185/1‑60 (MQ=255) tgatgCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCa > 1:210589/1‑60 (MQ=255) tgatgCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGcccc > 1:199277/1‑71 (MQ=255) tgCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaatgat < 1:3883401‑M2/41‑7 (MQ=255) gCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttca < 1:3738154/48‑1 (MQ=255) cAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCt < 1:3690498/70‑1 (MQ=255) cAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTa > 1:2125172/1‑71 (MQ=255) aCGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcattt < 1:1274687/48‑1 (MQ=255) ggTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcatttca > 1:2659381/1‑48 (MQ=255) ggTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcatttca > 1:3637465/1‑48 (MQ=255) aaaaaTCATTTGGCCTGATGGCGTTCAATGATTCCtttcatttca > 1:1531419/1‑45 (MQ=255) aaTCATTTGGCCTGATGGCGTTCAATGATTCCttacattt < 1:3645652/40‑1 (MQ=255) aaTCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAAcg < 1:2503794/71‑1 (MQ=255) aTCATTTGGCCTGATGGCGTTCaatgatttttaccgttgcatcatgtcgcccaatat > 1:3715181‑M2/1‑22 (MQ=255) aTCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAAcgc > 1:562391/1‑71 (MQ=255) tCATTTGGCCTGATGGCGTTCaatgatttttaccgttgcatcatgtcgc < 1:1403283‑M2/49‑29 (MQ=255) tCATTTGGCCTGATGGCGTTCaatgatttttaccgttgcatcatgtcgc < 1:716815‑M2/49‑29 (MQ=255) aTTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGaa < 1:1391427/71‑1 (MQ=255) tGGCCTGATGGCGTTCAATGATTCCTTTCATCTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATAc > 1:1048748/1‑71 (MQ=255) ggCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATAc < 1:2454903/70‑1 (MQ=255) gCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCaa < 1:78917/37‑1 (MQ=255) tGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCgccgcc > 1:516096/1‑42 (MQ=255) tGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTc > 1:3336056/1‑71 (MQ=255) gATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGa > 1:2506924/1‑51 (MQ=255) gATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTc < 1:793397/67‑1 (MQ=255) aTGGCGTTCaatgatttttaccgttgcatcatgtcgcccaatatgatgcttgctcgtaccaggcccc < 1:3825001‑M2/67‑59 (MQ=255) aTGGCGTTCaatgatttttaccgttgcatcatgtcgcccaatatgatgcttgctcgtaccaggcccc < 1:3405871‑M2/67‑59 (MQ=255) ggCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAAcg > 1:3316566/1‑55 (MQ=255) gTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCgtgt < 1:3415975/71‑1 (MQ=255) cAATGATTCCTTTCATTTCAGCAGCCGCCGCCCCGTCTACGat > 1:1468976/1‑43 (MQ=255) cAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTc < 1:1356607/70‑1 (MQ=255) | CTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTC > minE/1262388‑1262525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |