New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	= 1082426	32 (0.540)	2 (0.040)	3/88	NT	6.7%	intergenic (‑258/+197)	ydhY/ydhZ	predicted 4Fe‑4S ferridoxin‑type protein/hypothetical protein
	?	minE	= 1082435	28 (0.550)					intergenic (‑267/+188)	ydhY/ydhZ	predicted 4Fe‑4S ferridoxin‑type protein/hypothetical protein

TATTCTGAGCCCTTAACATTGATCGTTATCAATTAAAATTACAAAGCAAGAAATTATAAGTGAACTGATATTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/1082351‑1082426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttatt‑TCAAATGATAATAAATATCAGTTCACTTATAATTTCTTGCTTTGTAATTTTAATTGATAACGATCAATG  <  minE/1082435‑1082367                                                                                                                                                    TATTCTGAGCCCTTAACATTGATCGTTATCAATTAAAATTACAAAGCAAGAAATTATAAGTGAACTGATAT                                                                             >  1:2710732/1‑71   TTCTGAGCCCTTAACATTGATCGTTATCAATTAAAATTACAAAGCAAGAAATTATAAGTGAACTGATATT                                                                            <  1:1508744/70‑1     CTGAGCCCTTAACATTGATCGTTATCAATTAAAATTACAAAGCAAGAAATTATAAGTGAACTGATATTTA                                                                          <  1:2121885/70‑1                                ATTAAAATTACAAAGCAAGAAATTATAAGTGAACTGATATTTATT‑TCAAATGATAATAA                                                         <  1:731332/59‑1                                        TACAAAGCAAGAAATTATAAGTGAACTGATATTTATT‑TCAAATGATAATAAA                                                        >  1:2084327/1‑52                                                                  TGATATTTATTATCATTTGA‑AATAAATATCAGTTCACTTATAATTTCTTGCTTTGTAATTTTAA                  <  1:1018434/64‑1                                                                      ATTTATT‑TCAAATGATAATAAATATCAGTTCACTTATAATTTCTTGCTTTGTAATTTTAATTGATAACGAT       <  1:3682136/71‑1                                                                      ATTTATT‑TAAAATGATAATAAATATCAGTTCACTTATAATTT                                    >  1:1651247/1‑42                                                                           TT‑TCAAATGATAATAAATATCAGTTCACTTATAATTTCTTGCTTTGTAATTTTAATTGATAACGATCAATG  <  1:1715300/71‑1                                                                                                                                                    TATTCTGAGCCCTTAACATTGATCGTTATCAATTAAAATTACAAAGCAAGAAATTATAAGTGAACTGATATTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/1082351‑1082426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttatt‑TCAAATGATAATAAATATCAGTTCACTTATAATTTCTTGCTTTGTAATTTTAATTGATAACGATCAATG  <  minE/1082435‑1082367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.