New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	= 1082426	32 (0.540)	2 (0.040)	3/88	NT	6.7%	intergenic (‑258/+197)	ydhY/ydhZ	predicted 4Fe‑4S ferridoxin‑type protein/hypothetical protein
	?	minE	= 1082435	28 (0.550)					intergenic (‑267/+188)	ydhY/ydhZ	predicted 4Fe‑4S ferridoxin‑type protein/hypothetical protein

CATTGATCGTTATCAATTAAAATTACAAAGCAAGAAATTATAAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGAAAATAAAAAT  >  minE/1082367‑1082491                                                                     |                                                         cATTGATCGTTATCAATTAAAATTACAAAGCAAGAAATTATAAGTGAACTGATATTTATTATCATTTGAaa                                                        <  1:1715300‑M2/71‑3 (MQ=255)      aTCGTTATCAATTAAAATTACAAAGCAAGAAATTATAAGTGAACTGATATTTATTATCATTTGAaataaat                                                   <  1:3682136‑M2/71‑8 (MQ=255)                 ttAAAATTACAAAGCAAGAAATTATAAGTGAACTGATATTTATT‑TCAAATGAtaataaatatca                                              <  1:1018434‑M2/64‑13 (MQ=255)                  tAAAATTACAAAGCAAGAAATTATAAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGc                                        >  1:1183565/1‑70 (MQ=255)                   aaaaTTACAAAGCAAGAAATTATAAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGa                                      >  1:2223880/1‑71 (MQ=255)                        tACAAATCAAGAAATTATAAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAATCGACaa                                   <  1:1985883/69‑1 (MQ=255)                          cAAAGCAAGAAATTATAAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAatta                                <  1:2155690/70‑1 (MQ=255)                            aaGCAAGAAATTATAAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTAttt                             <  1:1991464/71‑1 (MQ=255)                               cAAGAAATTATAAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTATTtgtg                          <  1:1998107/71‑1 (MQ=255)                                 aGAAATTATAAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGAc                        >  1:1323907/1‑71 (MQ=255)                                   aaaTTATAAGTGAACTGATATTTATTATCATTTTAaataaat                                                   >  1:1651247‑M2/1‑35 (MQ=255)                                   aaaTTATAAGTGAACTGATATTTATTATCATTTGAAATAAATTTAAc                                              >  1:3422562/1‑47 (MQ=255)                                    aaTTATAAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAatta                                >  1:1642829/1‑60 (MQ=255)                                        ataAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCAt                  <  1:1523356/70‑1 (MQ=255)                                         taAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCAt                  <  1:398985/69‑1 (MQ=255)                                            gTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTAttt                             <  1:3702940/55‑1 (MQ=255)                                            gTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTAttt                             <  1:847467/55‑1 (MQ=255)                                             tGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTAttttt                           >  1:1487588/1‑54 (MQ=255)                                             tGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTAttttt                           >  1:265789/1‑54 (MQ=255)                                              gAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAatt                                 >  1:2132810/1‑49 (MQ=255)                                              gAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAatt                                 >  1:722590/1‑49 (MQ=255)                                              gAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAatt                                 >  1:668163/1‑49 (MQ=255)                                              gAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAatt                                 >  1:3348121/1‑49 (MQ=255)                                                    atatTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGaaaataa      >  1:3301818/1‑70 (MQ=255)                                                    atatTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGaaaataa      <  1:1678305/70‑1 (MQ=255)                                                    atatTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGaaaataa      <  1:1573894/70‑1 (MQ=255)                                                    atatTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGaaaata       <  1:3305505/69‑1 (MQ=255)                                                      atttattATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGaaaataaaaa   >  1:1710219/1‑71 (MQ=255)                                                      atttattATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGaaaataaaaa   >  1:1619064/1‑71 (MQ=255)                                                       tttattATCATTTGAaataaatatcagttcacttataatttcttgctttgta                     >  1:2084327‑M2/1‑15 (MQ=255)                                                       tttattATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGaaaataaaaat  <  1:2837043/71‑1 (MQ=255)                                                       tttattATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGaaaataaaaat  <  1:2109559/71‑1 (MQ=255)                                                        ttattaTCATTTGAaataaatatcagttcacttataatttcttgctttgtaattttaat             <  1:731332‑M2/59‑46 (MQ=255)                                                              tCATTTGAAATAAATTTAACTTAAGCGACAATTATTtgtg                          <  1:3398594/40‑1 (MQ=255)                                                              tCATTTGAAATAAATTTAACTTAAGCGACAATTATTtgtg                          <  1:171572/40‑1 (MQ=255)                                                                  ttGAAATAAATTTAACTTAAGCGACAATTATTTGTGACttt                     <  1:2724869/41‑1 (MQ=255)                                                                    gAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTc                    >  1:569400/1‑40 (MQ=255)                                                                     |                                                         CATTGATCGTTATCAATTAAAATTACAAAGCAAGAAATTATAAGTGAACTGATATTTATTATCATTTGAAATAAATTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGAAAATAAAAAT  >  minE/1082367‑1082491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.