| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2041126 | 94 (1.590) | 9 (0.170) | 3/90 | NT | 9.7% | intergenic (+173/‑219) | yqiH/yqiI | predicted periplasmic pilin chaperone/conserved hypothetical protein |
| ? | minE | = 2041151 | 84 (1.610) | intergenic (+198/‑194) | yqiH/yqiI | predicted periplasmic pilin chaperone/conserved hypothetical protein | |||||
CTTACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2041051‑2041126‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttacCCCATTTGTTCCGATATAACCCAGCGTAACGTGATAAGGCATCTTATTGTTAAAGCGGATCGAACCG < minE/2041151‑2041085 CTTACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCAC < 1:2858667/71‑1CTTACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCAC > 1:269912/1‑71 ACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGT > 1:3290985/1‑70 CGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTT < 1:1404686/70‑1 CGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTT < 1:603902/70‑1 CGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTT < 1:2370980/70‑1 GAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATAACGTTAC < 1:3607677/71‑1 AAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACG > 1:174355/1‑57 AAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACG > 1:2193928/1‑57 TCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTACCCCATTTGTTCCGATA > 1:260197/1‑70 TCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTACCCCATTTGTTCCGATA > 1:2939386/1‑70 TCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTACCCCATTTGTTCCGATA > 1:415324/1‑70 CGATCCGCTTTAACAATAAGATGCCTTATCACGTTACCCCATTTGTTCCGATATAACCCAGCGTAAC > 1:710070/1‑67 ATGCCTTATCACGTTACCCCATTTGTTCCGATATAACCCAGCGTA < 1:1713768/45‑1 ATGCCTTATCACGTTACCCCATTTGTTCCGATATAACCCAGCGTA < 1:623108/45‑1 ATGCCTTATCACGTTACCCCATTTGTTCCGATATAACCCAGCGTA < 1:1000554/45‑1 ATGCCTTATCACGTTACCCCATTTGTTCCGATATAACCCAGCGTA < 1:3219835/45‑1 ATGCCTTATCACGTTACCCCATTTGTTCCGATATAACCCAGCGTA < 1:264525/45‑1 TTACCCCATTTGTTCCGATATAACCCAGCGTAACGTGATAAGGCATCTTATTGTTAAAGCGGATCGAACCG < 1:218853/71‑1 TTACCCCATTTGTTCCGATATAACCCAGCGTAACGT < 1:644377/36‑1 ACCCCATTTGTTCCGATATAACCCAGCGTAACGTGA > 1:3715513/1‑36 ACCCCATTTGTTCCGATATAACCCAGCGTAACGTGA > 1:1970548/1‑36 ACCCCATTTGTTCCGATATAACCCAGCGTAACGTGA > 1:655064/1‑36 CTTACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2041051‑2041126‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttacCCCATTTGTTCCGATATAACCCAGCGTAACGTGATAAGGCATCTTATTGTTAAAGCGGATCGAACCG < minE/2041151‑2041085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |