| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2661445 | 52 (0.880) | 5 (0.090) | 3/94 | NT | 9.6% | coding (1384/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | minE | = 2661470 | 46 (0.850) | coding (1359/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression | |||||
ACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2661373‑2661445‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGAAAACATCGATCTCTTCGACCGTATGCAACTGGAACAC < minE/2661470‑2661401 ACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCC > 1:3551169/1‑71 CTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCT > 1:950488/1‑71 CTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCT < 1:591695/71‑1 TGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCCGCGCTTACGGCGTTGCTGGGCGCAGA < 1:1665321/71‑1 TTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCCGCGCTTACGGCGTTGCTGGGCGCAGAG < 1:1238726/70‑1 TTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCCGCGCTTACGGCGTTGCTGGGCGCAGAG < 1:2880894/70‑1 TTCCACTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCCGCGCTTACGGCGTTGCTGGGCGCAGAG < 1:991301/70‑1 CAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAG < 1:376132/71‑1 TTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTC < 1:2544044/36‑1 CCTCCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGAAAACATCGATCTCTTCGACCGTATGCAACTGGAA > 1:3457116/1‑71 CTCCGCGCTTACGGCGTTGCTGGGCGAAGAGGCAGAAAACATCGATCTCTTCGACCGTAT > 1:3614471/1‑60 TCCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGAAAACATCGATCTCTTCGACCG < 1:3339940/56‑1 TCCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGAAAACATCGATCTCTTCGACCG < 1:2591657/56‑1 CCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGAAAACATCGATCTCTTCGACCGTATGCAACTGGAACAC > 1:3125187/1‑71 CCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGAAAACATCGATCTCTTCGACCGTATGCAACTGGAACAC > 1:2665590/1‑71 CCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGAAAACATCGATCTCTTCGACCGTATGCAACTGGAACAC > 1:2414030/1‑71 CCGCGCTTACGGCGTTGCTGGGCCCAGAGGCAGAAAACATCGATCTCTTCGACCGTATGCAACTGGAACAC > 1:3693844/1‑71 ACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2661373‑2661445‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGAAAACATCGATCTCTTCGACCGTATGCAACTGGAACAC < minE/2661470‑2661401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |