| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2661445 | 52 (0.880) | 5 (0.090) | 3/94 | NT | 9.6% | coding (1384/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | minE | = 2661470 | 46 (0.850) | coding (1359/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression | |||||
GTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACGTCCAGAGTGA > minE/2661401‑2661537 | gtgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGGGCCCAGCAACGCCGTAAGCGCGg > 1:3693844‑M2/1‑70 (MQ=255)gtgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGg > 1:2665590‑M2/1‑70 (MQ=255)gtgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGg > 1:2414030‑M2/1‑70 (MQ=255)gtgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGg > 1:3125187‑M2/1‑70 (MQ=255) ttCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGgagg > 1:3457116‑M2/1‑67 (MQ=255) tCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAggg > 1:2786922/1‑71 (MQ=255) ccAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAgggg > 1:816607/1‑71 (MQ=255) cAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGggc < 1:1603466/71‑1 (MQ=255) ttGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGggcggc < 1:2696985/71‑1 (MQ=255) cATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGctc < 1:852038/70‑1 (MQ=255) cATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGctc < 1:704002/70‑1 (MQ=255) cATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGctc < 1:2165318/70‑1 (MQ=255) cATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGctc < 1:3138798/70‑1 (MQ=255) aTACGGTCGAAGAGATCGATGTTTTCTGCCTCTTCGCCCAGCAACGCCGTAAGCGCGgag > 1:3614471‑M2/1‑57 (MQ=255) aTACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCtctc < 1:3609529/71‑1 (MQ=255) aTACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCtctc > 1:3584634/1‑71 (MQ=255) tACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc < 1:2288431/71‑1 (MQ=255) tACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc > 1:2595474/1‑71 (MQ=255) tACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc < 1:624230/71‑1 (MQ=255) tACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc < 1:3544849/71‑1 (MQ=255) cGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGga < 1:2591657‑M2/56‑3 (MQ=255) cGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGga < 1:3339940‑M2/56‑3 (MQ=255) gTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGc > 1:2944407/1‑70 (MQ=255) tCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGc > 1:2358184/1‑69 (MQ=255) tCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGc > 1:1867121/1‑69 (MQ=255) gAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGt > 1:742885/1‑71 (MQ=255) aaGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGcgcg < 1:4678/48‑1 (MQ=255) aaGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGcgcg < 1:2492782/48‑1 (MQ=255) aaGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGcgcg < 1:3464062/48‑1 (MQ=255) aaGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGc > 1:979078/1‑66 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTta > 1:3297076/1‑71 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTta < 1:3464998/71‑1 (MQ=255) tCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGct < 1:2279648/53‑1 (MQ=255) cGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTATGCGCGGAGGGGCGGCTCTCCTGc < 1:3513470/59‑1 (MQ=255) cGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAgcg > 1:462000/1‑70 (MQ=255) cGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAgcg > 1:2009116/1‑70 (MQ=255) gATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAgcg < 1:974385/69‑1 (MQ=255) aTGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGG‑‑GGCTCTCCTGCCAGTTATAGCGCAGAc > 1:516058/1‑71 (MQ=255) tttCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACgg > 1:181836/1‑71 (MQ=255) ttCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACgg < 1:3230737/70‑1 (MQ=255) tCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGt < 1:3266183/70‑1 (MQ=255) cTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGgaggcagaaaacatcgatctcttcgaccgtatgcaactg < 1:376132‑M2/71‑40 (MQ=255) cTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGtt > 1:3408149/1‑70 (MQ=255) ccTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTAt < 1:3583102/70‑1 (MQ=255) ctctGCGCCCAGCAACGCCGTAAGCGCGgaggcagaaaacatcgatctcttcgaccgtatgcaagtggaa < 1:991301‑M2/70‑43 (MQ=255) ctctGCGCCCAGCAACGCCGTAAGCGCGgaggcagaaaacatcgatctcttcgaccgtatgcaactggaa < 1:1238726‑M2/70‑43 (MQ=255) ctctGCGCCCAGCAACGCCGTAAGCGCGgaggcagaaaacatcgatctcttcgaccgtatgcaactggaa < 1:2880894‑M2/70‑43 (MQ=255) tctGCGCCCAGCAACGCCGTAAGCGCGgaggcagaaaacatcgatctcttcgaccgtatgcaactggaaca < 1:1665321‑M2/71‑45 (MQ=255) ctGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTAtc > 1:1617711/1‑68 (MQ=255) gcCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTAt > 1:3241316/1‑63 (MQ=255) gcCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCtt > 1:2043943/1‑71 (MQ=255) ccAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTc < 1:1809108/70‑1 (MQ=255) aaCGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGCCGGTTTATCTCATCTTCAACCa > 1:1409543/1‑70 (MQ=255) aCGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACg > 1:2638044/1‑71 (MQ=255) aCGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACg > 1:3680492/1‑71 (MQ=255) aCGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACg > 1:909426/1‑71 (MQ=255) ccGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGGAGACgg < 1:487168/47‑1 (MQ=255) ccGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACGTcc < 1:2681839/71‑1 (MQ=255) tAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCaa < 1:14077/60‑1 (MQ=255) tAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCaa < 1:1446139/60‑1 (MQ=255) tAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACg < 1:3734155/65‑1 (MQ=255) aGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACGTCCagag < 1:1849282/70‑1 (MQ=255) aGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACGTCCagag < 1:1662287/70‑1 (MQ=255) aGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACGTCCagag < 1:1938018/70‑1 (MQ=255) aGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACGTCCagag < 1:2937746/70‑1 (MQ=255) gcgcGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACGTCCAGAGTg < 1:503221/71‑1 (MQ=255) gcgGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACGTCCAGAGTGa > 1:78334/1‑70 (MQ=255) | GTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCATCTTCAACCACGTCCAGAGTGA > minE/2661401‑2661537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |