| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2661445 | 52 (0.880) | 5 (0.090) | 3/94 | NT | 9.6% | coding (1384/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | minE | = 2661470 | 46 (0.850) | coding (1359/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression | |||||
TGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCA > minE/2661377‑2661515 | tGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCctct > 1:799588/1‑70 (MQ=255)tGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTg > 1:1266528/1‑71 (MQ=255)tGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTg > 1:877655/1‑71 (MQ=255) ggcggcAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGcc > 1:760585/1‑70 (MQ=255) gcggcAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGcc > 1:2444967/1‑69 (MQ=255) gcggcAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGcc > 1:892302/1‑69 (MQ=255) ggcAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGc < 1:2113050/71‑1 (MQ=255) aGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCa > 1:1120666/1‑66 (MQ=255) aTAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAg > 1:1021857/1‑71 (MQ=255) aTAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAg > 1:2021866/1‑71 (MQ=255) gtgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGGGCCCAGCAACGCCGTAAGCGCGg > 1:3693844‑M2/1‑70 (MQ=255) gtgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGg > 1:2414030‑M2/1‑70 (MQ=255) gtgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGg > 1:2665590‑M2/1‑70 (MQ=255) gtgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGg > 1:3125187‑M2/1‑70 (MQ=255) tgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCcgcgcttacggcgttgctgggcgcaga < 1:1665321‑M1/71‑28 (MQ=255) tgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAgc > 1:3113885/1‑66 (MQ=255) tgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAgc > 1:2452744/1‑66 (MQ=255) tgtTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAg > 1:1506431/1‑65 (MQ=255) ttCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCcgcgcttacggcgttgctgggcgcagag < 1:2880894‑M1/70‑29 (MQ=255) ttCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCcgcgcttacggcgttgctgggcgcagag < 1:1238726‑M1/70‑29 (MQ=255) ttCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGgagg > 1:3457116‑M2/1‑67 (MQ=255) ttCCACTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCcgcgcttacggcgttgctgggcgcagag < 1:991301‑M1/70‑29 (MQ=255) tCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAggg > 1:2786922/1‑71 (MQ=255) ccAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAgggg > 1:816607/1‑71 (MQ=255) cAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCcgcgcttacggcgttgctgggcgcagaggcag < 1:376132‑M1/71‑33 (MQ=255) cAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGggc < 1:1603466/71‑1 (MQ=255) ttGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGggcggc < 1:2696985/71‑1 (MQ=255) ttGCATACGGTCGAAGAGATCGATGTTTTCTGCCTC < 1:2544044‑M1/36‑1 (MQ=255) gCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTg > 1:675493/1‑36 (MQ=255) gCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTg > 1:3567750/1‑36 (MQ=255) cATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGc < 1:1501352/48‑1 (MQ=255) cATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGc < 1:816312/48‑1 (MQ=255) cATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGctc < 1:3138798/70‑1 (MQ=255) cATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGctc < 1:704002/70‑1 (MQ=255) cATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGctc < 1:2165318/70‑1 (MQ=255) cATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGctc < 1:852038/70‑1 (MQ=255) aTACGGTCGAAGAGATCGATGTTTTCTGCCTCTTCGCCCAGCAACGCCGTAAGCGCGgag > 1:3614471‑M2/1‑57 (MQ=255) aTACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCtctc > 1:3584634/1‑71 (MQ=255) aTACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCtctc < 1:3609529/71‑1 (MQ=255) tACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAgc < 1:2087262/53‑1 (MQ=255) tACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc < 1:624230/71‑1 (MQ=255) tACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc > 1:2595474/1‑71 (MQ=255) tACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc < 1:2288431/71‑1 (MQ=255) tACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc < 1:3544849/71‑1 (MQ=255) cGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGga < 1:3339940‑M2/56‑3 (MQ=255) cGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGga < 1:2591657‑M2/56‑3 (MQ=255) gTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTa < 1:183126/46‑1 (MQ=255) gTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTa < 1:1788234/46‑1 (MQ=255) gTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTa < 1:3025798/46‑1 (MQ=255) gTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTa < 1:2689184/46‑1 (MQ=255) gTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGc > 1:2944407/1‑70 (MQ=255) tCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGc > 1:1867121/1‑69 (MQ=255) tCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGc > 1:2358184/1‑69 (MQ=255) gAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGt > 1:742885/1‑71 (MQ=255) aaGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAgcg > 1:1702161/1‑46 (MQ=255) aaGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGcgcg < 1:3464062/48‑1 (MQ=255) aaGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGcgcg < 1:2492782/48‑1 (MQ=255) aaGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGcgcg < 1:4678/48‑1 (MQ=255) aaGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGc > 1:979078/1‑66 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTta < 1:3464998/71‑1 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTta > 1:3297076/1‑71 (MQ=255) tCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGct < 1:2279648/53‑1 (MQ=255) cGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTATGCGCGGAGGGGCGGCTCTCCTGc < 1:3513470/59‑1 (MQ=255) cGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAgcg > 1:2009116/1‑70 (MQ=255) cGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAgcg > 1:462000/1‑70 (MQ=255) gATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAgcg < 1:974385/69‑1 (MQ=255) aTGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGG‑‑GGCTCTCCTGCCAGTTATAGCGCAGAc > 1:516058/1‑71 (MQ=255) tttCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACgg > 1:181836/1‑71 (MQ=255) ttCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACgg < 1:3230737/70‑1 (MQ=255) tCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGt < 1:3266183/70‑1 (MQ=255) cTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGgaggcagaaaacatcgatctcttcgaccgtatgcaactg < 1:376132‑M2/71‑40 (MQ=255) cTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGtt > 1:3408149/1‑70 (MQ=255) ccTCcgcgcttacggcgttgctgggcgcagaggcagaaaacatcgatctcttcgaccgtatgcaactggaa > 1:3457116‑M1/1‑4 (MQ=255) ccTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTAt < 1:3583102/70‑1 (MQ=255) ctctGCGCCCAGCAACGCCGTAAGCGCGgaggcagaaaacatcgatctcttcgaccgtatgcaagtggaa < 1:991301‑M2/70‑43 (MQ=255) ctctGCGCCCAGCAACGCCGTAAGCGCGgaggcagaaaacatcgatctcttcgaccgtatgcaactggaa < 1:2880894‑M2/70‑43 (MQ=255) ctctGCGCCCAGCAACGCCGTAAGCGCGgaggcagaaaacatcgatctcttcgaccgtatgcaactggaa < 1:1238726‑M2/70‑43 (MQ=255) cTCcgcgcttacggcgttgctgggcgaagaggcagaaaacatcgatctcttcgaccgtat > 1:3614471‑M1/1‑3 (MQ=255) tctGCGCCCAGCAACGCCGTAAGCGCGgaggcagaaaacatcgatctcttcgaccgtatgcaactggaaca < 1:1665321‑M2/71‑45 (MQ=255) tCcgcgcttacggcgttgctgggcgcagaggcagaaaacatcgatctcttcgaccg < 1:3339940‑M1/56‑55 (MQ=255) tCcgcgcttacggcgttgctgggcgcagaggcagaaaacatcgatctcttcgaccg < 1:2591657‑M1/56‑55 (MQ=255) ctGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTAtc > 1:1617711/1‑68 (MQ=255) ccgcgcttacggcgttgctgggcgcagaggcagaaaacatcgatctcttcgaccgtatgcaactggaacac > 1:3125187‑M1/1‑1 (MQ=255) ccgcgcttacggcgttgctgggcgcagaggcagaaaacatcgatctcttcgaccgtatgcaactggaacac > 1:2665590‑M1/1‑1 (MQ=255) ccgcgcttacggcgttgctgggcgcagaggcagaaaacatcgatctcttcgaccgtatgcaactggaacac > 1:2414030‑M1/1‑1 (MQ=255) ccgcgcttacggcgttgctgggcccagaggcagaaaacatcgatctcttcgaccgtatgcaactggaacac > 1:3693844‑M1/1‑1 (MQ=255) | TGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTGCATACGGTCGAAGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCCTGCCAGTTATAGCGCAGACGGTTTATCTCA > minE/2661377‑2661515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |