New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 274373NA (NA)55 (1.430) 29/98 NT 100% intergenic (‑32/‑176) insH/mmuP IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter
?W3110S.gb 576000 = 0 (0.000)pseudogene (109/1128 nt) nmpC DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin

Only 100 of 113 total aligned reads displayed.

ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/274304‑274373
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAA  >  W3110S.gb/576000‑576067
                                                                                                                                          
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:2558338/71‑1
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:2520630/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:2671959/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:2314876/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:2042049/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:2906617/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:1995327/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:3583189/71‑1
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:3705336/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:1534317/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:6181/1‑71
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:734492/71‑1
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:1239495/1‑70
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:1822456/70‑1
  GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:2434577/70‑1
  GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:2719864/1‑69
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:1084816/1‑71
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:2029937/71‑1
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:3667836/1‑71
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:295169/71‑1
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                   <  1:1515610/70‑1
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                   <  1:2480351/70‑1
     GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA                                                                >  1:3555759/1‑71
      AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC                                                               <  1:641244/71‑1
      AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:1468291/66‑1
      AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:2412202/66‑1
       ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT                                                              <  1:141769/71‑1
        CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT                                                              >  1:1094259/1‑70
          CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:2528638/64‑1
           TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT                                                              <  1:2829026/67‑1
           TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:3253818/63‑1
           TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:1572247/61‑1
            GTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:1152509/60‑1
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCA                                                        <  1:3083609/71‑1
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATG                                                          >  1:3366655/1‑69
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATG                                                          >  1:2299789/1‑69
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGAT                                                           <  1:3085276/68‑1
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC                                                               >  1:247348/1‑64
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:1494018/58‑1
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:766976/58‑1
             TTCTATGGCTCCAGATGACAAACATGACCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATG                                                          >  1:3129797/1‑69
              TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTAAGTACTGATGCAG                                                       >  1:2024438/1‑71
               CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGC                                                      >  1:3151450/1‑71
                  TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGC                                                      <  1:291029/68‑1
                  TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:2290714/53‑1
                    GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAG                                                 <  1:141174/71‑1
                      TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:2210375/1‑52
                      TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:1337063/49‑1
                        CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA                                             <  1:19371/71‑1
                        CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA                                             <  1:720302/71‑1
                        CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA                                             <  1:797621/71‑1
                        CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA                                             <  1:932684/71‑1
                        CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA                                             <  1:691026/71‑1
                        CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCA                                                        >  1:1900116/1‑60
                        CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC                                                               >  1:3573579/1‑53
                        CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA                                                                >  1:1194128/1‑52
                        CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:1754395/1‑50
                         AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA                                            <  1:2823466/71‑1
                         AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:1931012/47‑1
                          GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA                                           >  1:2403355/1‑71
                          GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA                                            <  1:935366/70‑1
                          GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:2013155/48‑1
                           ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:940738/1‑44
                           ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:1029982/1‑44
                            TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGC                                                      <  1:1969990/58‑1
                            TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:3444106/1‑43
                             GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC                                                               >  1:2104460/1‑48
                             GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:2411974/43‑1
                              ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC                                       <  1:654417/71‑1
                                AAACATGATCTCATATCAGGGACTTGTTCTCACCTTCCTTA                                                                   >  1:2719813/1‑41
                                AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA                                     >  1:560041/1‑71
                                AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA                                            <  1:2255272/64‑1
                                AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:1113772/42‑1
                                AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:269368/40‑1
                                AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:836051/1‑39
                                   CATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:1027382/1‑39
                                     TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTT                                <  1:1475881/71‑1
                                       ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAA                              >  1:101936/1‑71
                                          TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTT                           >  1:1252339/1‑71
                                          TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAA                              <  1:3580357/68‑1
                                            ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTT                          <  1:1335927/70‑1
                                               TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCA                      >  1:3504981/1‑71
                                               TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTC                       <  1:2594491/70‑1
                                                 AGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATC                    >  1:1758696/1‑71
                                                  GGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCAT                     <  1:1062427/69‑1
                                                   GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT                  <  1:2482755/71‑1
                                                      CTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA                                             <  1:3392817/41‑1
                                                       TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGC              >  1:183886/1‑71
                                                         GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT                                          >  1:1726072/1‑41
                                                         GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT                                          >  1:3359730/1‑41
                                                         GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA                                           >  1:147436/1‑40
                                                         GTTCGCACCTTCCTTAGTACTGATGCAGCAACAGCAGAAA                                           >  1:919175/1‑40
                                                          TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCT           >  1:840880/1‑71
                                                           TCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA                                     >  1:735637/1‑44
                                                               ACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTT      <  1:223618/71‑1
                                                                CCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC                                       <  1:1591519/37‑1
                                                                  TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG    >  1:1807673/1‑70
                                                                  TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA                                     >  1:1453080/1‑37
                                                                  TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA                                     >  1:3439370/1‑37
                                                                   TCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAA  >  1:1764240/1‑71
                                                                                                                                          
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/274304‑274373
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAA  >  W3110S.gb/576000‑576067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.