| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 55 (1.430) | 29/98 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
Only 100 of 113 total aligned reads displayed.
ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAA > W3110S.gb/575930‑576067 | atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2671959‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:2558338‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2520630‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2906617‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2314876‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2042049‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1995327‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:3583189‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3705336‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1534317‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:6181‑M2/71‑71 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:734492‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1822456‑M2/1‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1239495‑M2/70‑70 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2434577‑M2/2‑1 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2719864‑M2/69‑69 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:2480351‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:1515610‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:295169‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1084816‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:3667836‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2029937‑M2/4‑1 (MQ=255) gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:3555759‑M2/66‑71 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1468291‑M2/2‑1 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2412202‑M2/2‑1 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc < 1:641244‑M2/7‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:141769‑M2/8‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt > 1:1094259‑M2/63‑70 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2528638‑M2/4‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1572247‑M2/2‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:3253818‑M2/4‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:2829026‑M2/8‑1 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1152509‑M2/2‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1494018‑M2/1‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:766976‑M2/1‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc > 1:247348‑M2/58‑64 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGAt < 1:3085276‑M2/11‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg > 1:2299789‑M2/58‑69 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg > 1:3366655‑M2/58‑69 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCa < 1:3083609‑M2/14‑1 (MQ=255) ttctatggctccagatgacaaacatgacctcatatcagggacttgttcgcaccttccTTAGTACTGATg > 1:3129797‑M2/58‑69 (MQ=255) tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTAAGTACTGATGCAg > 1:2024438‑M2/57‑71 (MQ=255) ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGc > 1:3151450‑M2/56‑71 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:2290714‑M2/1‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGc < 1:291029‑M2/16‑1 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag < 1:141174‑M2/21‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1337063‑M2/1‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2210375‑M2/49‑52 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1754395‑M2/47‑50 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:1194128‑M2/47‑52 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc > 1:3573579‑M2/47‑53 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCa > 1:1900116‑M2/47‑60 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:19371‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:720302‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:691026‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:797621‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:932684‑M2/25‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1931012‑M2/2‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa < 1:2823466‑M2/26‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2013155‑M2/4‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:2403355‑M2/45‑71 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa < 1:935366‑M2/26‑1 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:940738‑M2/44‑44 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1029982‑M2/44‑44 (MQ=255) tgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3444106‑M2/43‑43 (MQ=255) tgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGc < 1:1969990‑M2/16‑1 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2411974‑M2/2‑1 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc > 1:2104460‑M2/42‑48 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:654417‑M2/31‑1 (MQ=255) aaacatgatctcatatcagggacttgttctcaccttccTTa > 1:2719813‑M2/39‑41 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcctt < 1:269368‑M2/2‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcct > 1:836051‑M2/39‑39 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1113772‑M2/4‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa < 1:2255272‑M2/26‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa > 1:560041‑M2/39‑71 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAg > 1:1027382‑M2/36‑39 (MQ=255) tgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGtt < 1:1475881‑M2/38‑1 (MQ=255) atctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTaa > 1:101936‑M2/32‑71 (MQ=255) tcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTaa < 1:3580357‑M2/40‑1 (MQ=255) tcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttt > 1:1252339‑M2/29‑71 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt < 1:1335927‑M2/44‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTc < 1:2594491‑M2/47‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa > 1:3504981‑M2/24‑71 (MQ=255) agggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc > 1:1758696‑M2/22‑71 (MQ=255) gggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCAt < 1:1062427‑M2/49‑1 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:2482755‑M2/52‑1 (MQ=255) cttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:3392817‑M2/25‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGc > 1:183886‑M2/16‑71 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:147436‑M2/14‑40 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt > 1:1726072‑M2/14‑41 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt > 1:3359730‑M2/14‑41 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCAACAGCAGaaa > 1:919175‑M2/14‑40 (MQ=255) ttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCt > 1:840880‑M2/13‑71 (MQ=255) tcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa > 1:735637‑M2/12‑44 (MQ=255) accttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttttt < 1:223618‑M2/64‑1 (MQ=255) ccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:1591519‑M2/31‑1 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa > 1:1453080‑M2/5‑37 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa > 1:3439370‑M2/5‑37 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTg > 1:1807673‑M2/5‑70 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGaa > 1:1764240‑M2/4‑71 (MQ=255) | ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAA > W3110S.gb/575930‑576067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |