| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 55 (1.430) | 29/98 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAG > W3110S.gb/274304‑274435 | atgatgAAGCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCg < 1:3044703/71‑1 (MQ=14) atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGa < 1:434831/70‑1 (MQ=35) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:1013784/71‑1 (MQ=255) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:856782/71‑1 (MQ=255) ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:2238000/69‑1 (MQ=255) cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt < 1:1544297/71‑1 (MQ=255) cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt > 1:3502245/1‑71 (MQ=255) tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt < 1:3037122/70‑1 (MQ=255) gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCg < 1:2206385/59‑1 (MQ=31) cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGc < 1:2892604/70‑1 (MQ=255) gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcgg > 1:512618/1‑71 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTAGCACATTCCGGAGGCGTTATGAGCTGGCGGCCCtt > 1:2097477/1‑70 (MQ=255) aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCg < 1:379791/44‑1 (MQ=32) ccAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTg > 1:1883154/2‑70 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:1925373/71‑1 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:3231908/71‑1 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg < 1:2318418/51‑1 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt < 1:1423481/71‑1 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTg < 1:3596655/71‑1 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa > 1:2077101/1‑36 (MQ=255) tCAGGGGCTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt > 1:675823/1‑50 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc > 1:2330684/1‑71 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc > 1:3240888/1‑71 (MQ=255) aGGGACTTGTTAGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtt < 1:2465864/47‑1 (MQ=255) ggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttttt < 1:1475068/48‑1 (MQ=255) aCTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt > 1:736285/1‑48 (MQ=255) cTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa < 1:1158800/53‑1 (MQ=255) ttGTTCGCACCTTCCGGAGGCGTTATGAGCTggcgg > 1:735969/1‑36 (MQ=255) ttGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGc > 1:2653486/1‑70 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCa > 1:1289550/1‑63 (MQ=255) ttCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAtt < 1:920127/71‑1 (MQ=255) aCCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatta > 1:3633647/1‑47 (MQ=255) cTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTg < 1:971957/35‑1 (MQ=255) tCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCAGCTATTAAg > 1:2569461/1‑65 (MQ=255) | ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAG > W3110S.gb/274304‑274435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |