| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 55 (1.430) | 35/98 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGTTT > W3110S.gb/315639‑315777 | cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAt > 1:2269608/1‑70 (MQ=31)cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa < 1:3262594/71‑1 (MQ=32) ccGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTcc > 1:2834278/1‑71 (MQ=255) aaCAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCgg > 1:3221943/1‑71 (MQ=255) aaCAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCgg > 1:1481604/1‑71 (MQ=255) aaCAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCgg > 1:1710191/1‑71 (MQ=255) aCAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCggg > 1:1248528/1‑71 (MQ=255) aaTTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTc > 1:394594/1‑71 (MQ=255) tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGt > 1:801188/1‑71 (MQ=255) tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCCGGTCGt < 1:2561202/71‑1 (MQ=255) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGtt < 1:3118416/70‑1 (MQ=255) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGtt < 1:359920/70‑1 (MQ=255) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTg > 1:1601969/1‑71 (MQ=255) gAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGt > 1:2687428/1‑71 (MQ=255) cAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTT‑TCCActc > 1:228292/1‑71 (MQ=255) aGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATaaa > 1:1309734/1‑48 (MQ=40) gAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCtt < 1:2527954/71‑1 (MQ=255) cGCTTAGGCCTGTGTCGATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGc > 1:3334204/1‑70 (MQ=255) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCa > 1:2330547/1‑71 (MQ=255) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCAt > 1:1083555/1‑71 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGt > 1:372522/1‑69 (MQ=255) gtgtCCATATTACGTGTGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa > 1:1071886/1‑68 (MQ=255) gtgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCata > 1:568487/1‑70 (MQ=255) tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCata < 1:3116412/69‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCata < 1:1348341/69‑1 (MQ=255) gtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt > 1:3103592/1‑70 (MQ=255) tCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCg < 1:703950/39‑1 (MQ=255) tCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCg < 1:811307/39‑1 (MQ=255) cATATTACGTGGGTAGGATCATAAAGTCCTCGTGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcac > 1:947572/1‑70 (MQ=255) cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCata > 1:1911177/1‑65 (MQ=255) cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcac < 1:3559432/70‑1 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCg < 1:1046509/35‑1 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAg < 1:1360050/59‑1 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCata < 1:2757168/63‑1 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCata < 1:3580919/63‑1 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa < 1:2037096/61‑1 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCttt < 1:810828/46‑1 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCa > 1:3656674/1‑51 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGc > 1:954055/1‑58 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt > 1:2667283/1‑63 (MQ=255) aCGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTcc > 1:572046/1‑37 (MQ=255) gggTAGGATCATAAAGTCCTCGGGTCGTTGTCCAc < 1:726816/35‑1 (MQ=255) ggTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCa > 1:3546032/1‑44 (MQ=255) gTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa < 1:2684066/51‑1 (MQ=255) aGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCa > 1:2457540/1‑70 (MQ=255) aTCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGc < 1:2272792/37‑1 (MQ=255) aTCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAg > 1:2721155/1‑71 (MQ=255) tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGt > 1:3106300/1‑71 (MQ=255) tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGt > 1:293435/1‑71 (MQ=255) cATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGtt > 1:2625836/1‑71 (MQ=255) aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTca < 1:3602865/49‑1 (MQ=255) aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTca > 1:84086/1‑49 (MQ=255) aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGttt > 1:1016910/1‑71 (MQ=255) aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGtt < 1:1048339/70‑1 (MQ=255) | CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGTTT > W3110S.gb/315639‑315777 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |