| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 11 (0.200) | 16 (0.350) | 5/108 | 0.8 | 58.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 13 (0.280) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
TTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4547438‑4547364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG > W3110S.gb/4547678‑4547747 TTTGTCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 1:103392/1‑71TTTGTCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 1:3558338/1‑71TTTGTCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 1:165162/1‑71TTTGTCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 1:1822511/1‑71TTTGTCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 1:1863836/1‑71TTTGTCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 1:1993848/1‑71TTTGTCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 1:2017957/1‑71TTTGTCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 1:3055943/1‑71TTTGTCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 1:2770986/1‑71TTTGTCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 1:2727548/1‑71 ATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATC < 1:1229338/70‑1 ATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATC < 1:446991/70‑1 ATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATC < 1:2252231/70‑1 ATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATC < 1:1435210/70‑1 ATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATC < 1:2043137/70‑1 TTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGG > 1:3647927/1‑71 TTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGG > 1:3477478/1‑71 GCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGC < 1:2773550/45‑1 CTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAA < 1:2404493/70‑1 CTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAA < 1:3672637/70‑1 CTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAA < 1:3255439/70‑1 CTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAA < 1:2873762/70‑1 CTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAA < 1:2920393/70‑1 CGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATC < 1:3820919/46‑1 TAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCAT > 1:2088473/1‑43 TTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCA < 1:843976/70‑1 TTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCA < 1:2460856/70‑1 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG < 1:2984211/71‑1 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG < 1:2061821/71‑1 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG < 1:2756515/71‑1 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG < 1:2637307/71‑1 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG < 1:4011524/71‑1 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG < 1:2194771/71‑1 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA < 1:2824090/68‑1 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA < 1:164138/68‑1 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA < 1:2147834/68‑1 TTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4547438‑4547364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG > W3110S.gb/4547678‑4547747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |