| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 11 (0.200) | 16 (0.350) | 5/108 | 0.8 | 58.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 13 (0.280) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
TTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG > W3110S.gb/4547610‑4547747 | ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:3928805/70‑1 (MQ=255)ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:1442674/70‑1 (MQ=255)ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:156761/70‑1 (MQ=255)ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:2994123/70‑1 (MQ=255)ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:2994120/70‑1 (MQ=255)ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:2877953/70‑1 (MQ=255)ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:2277179/70‑1 (MQ=255) atatttttatgcttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATc < 1:1229338‑M2/10‑1 (MQ=255) atatttttatgcttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATc < 1:446991‑M2/10‑1 (MQ=255) atatttttatgcttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATc < 1:2252231‑M2/10‑1 (MQ=255) atatttttatgcttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATc < 1:2043137‑M2/10‑1 (MQ=255) atatttttatgcttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATc < 1:1435210‑M2/10‑1 (MQ=255) tttatgcttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgg > 1:3477478‑M2/56‑71 (MQ=255) tttatgcttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgg > 1:3647927‑M2/56‑71 (MQ=255) cttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:3255439‑M2/21‑1 (MQ=255) cttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:2920393‑M2/21‑1 (MQ=255) cttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:2404493‑M2/21‑1 (MQ=255) cttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:2873762‑M2/21‑1 (MQ=255) cttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:3672637‑M2/21‑1 (MQ=255) cgtaacttatttatgatatggacagtttggccccaaATGTTTCATc < 1:3820919‑M2/10‑1 (MQ=255) taacttatttatgatatggacagtttggccccaaATGTTTCAt > 1:2088473‑M2/35‑43 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa < 1:2460856‑M2/43‑1 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa < 1:843976‑M2/43‑1 (MQ=255) ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg > 1:3940959/1‑37 (MQ=255) ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg > 1:2663790/1‑71 (MQ=255) ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg > 1:4051021/1‑71 (MQ=255) ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg > 1:197940/1‑71 (MQ=255) aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:277755/1‑70 (MQ=255) aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:1982084/1‑70 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa < 1:2147834‑M2/67‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa < 1:164138‑M2/67‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa < 1:2824090‑M2/67‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 1:2984211‑M2/70‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 1:2756515‑M2/70‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 1:2637307‑M2/70‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 1:2061821‑M2/70‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 1:4011524‑M2/70‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 1:2194771‑M2/70‑1 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACa > 1:280147/1‑69 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg > 1:826441/1‑70 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg > 1:952594/1‑70 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg > 1:3664982/1‑70 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg > 1:2456570/1‑70 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGAACAg > 1:1416381/1‑70 (MQ=255) | TTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG > W3110S.gb/4547610‑4547747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |