| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 11 (0.200) | 16 (0.350) | 5/108 | 0.8 | 58.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 13 (0.280) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAC > W3110S.gb/4547294‑4547432 | ctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:2637307‑M1/1‑1 (MQ=255)ctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:2194771‑M1/1‑1 (MQ=255)ctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:2756515‑M1/1‑1 (MQ=255)ctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:2061821‑M1/1‑1 (MQ=255)ctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:4011524‑M1/1‑1 (MQ=255)ctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:2984211‑M1/1‑1 (MQ=255) tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:2147834‑M1/1‑1 (MQ=255) tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:2824090‑M1/1‑1 (MQ=255) tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:164138‑M1/1‑1 (MQ=255) aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGG > 1:2350680‑M1/1‑71 (MQ=255) aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGG > 1:2814247‑M1/1‑71 (MQ=255) aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGG > 1:1379496‑M1/1‑71 (MQ=255) aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGG > 1:1374498‑M1/1‑71 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgac > 1:2038220‑M1/1‑64 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:1472480/1‑71 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:432213/1‑71 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat < 1:1566153‑M1/70‑12 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat < 1:506934‑M1/70‑12 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:843976‑M1/27‑1 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:2460856‑M1/27‑1 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagc < 1:645441‑M1/70‑22 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagc < 1:111291‑M1/70‑22 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagc < 1:2480162‑M1/69‑22 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcg < 1:3785628‑M1/70‑26 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcg < 1:1886171‑M1/70‑26 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcg < 1:441481‑M1/69‑26 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAg < 1:2873762‑M1/49‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAg < 1:3672637‑M1/49‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAg < 1:3255439‑M1/49‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAg < 1:2920393‑M1/49‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAg < 1:2404493‑M1/49‑1 (MQ=255) aaataaatACAAGACTATTGGGGCCAttttgactcatagaggaaagcatcg < 1:3186207‑M1/51‑26 (MQ=255) ccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATaaa > 1:3477478‑M1/17‑71 (MQ=255) ccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATaaa > 1:3647927‑M1/17‑71 (MQ=255) gatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:3820919‑M1/36‑1 (MQ=255) gatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAatat < 1:2043137‑M1/60‑1 (MQ=255) gatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAatat < 1:446991‑M1/60‑1 (MQ=255) gatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAatat < 1:1435210‑M1/60‑1 (MQ=255) gatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAatat < 1:1229338‑M1/60‑1 (MQ=255) gatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAatat < 1:2252231‑M1/60‑1 (MQ=255) atgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTa > 1:2088473‑M1/10‑43 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTA‑TTTTTCTCAAGCATAAAAATATTaaaa < 1:1226158/71‑1 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTA‑TTTTTCTCAAGCATAAAAATATTaaaa < 1:1666254/71‑1 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTA‑TTTTTCTCAAGCATAAAAATATTaaaa < 1:3278071/71‑1 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTA‑TTTTTCTCAAGCATAAAAATATTaaaa < 1:3163193/71‑1 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTA‑TTTTTCTCAAGCATAAAAATATTaaaa < 1:2102949/71‑1 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTA‑TTTTTCTCAAGCATAAAAATATTaaaa < 1:2348093/71‑1 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTA‑TTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:2232642/71‑1 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTA‑TTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:2352638/71‑1 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTA‑TTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:2347866/71‑1 (MQ=255) | ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAC > W3110S.gb/4547294‑4547432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |