| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 3 (0.080) | 15 (0.410) | 8/96 | NT | 84.2% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
GCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018642‑2018571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATTACTCTCAC > W3110S.gb/2519723‑2519791 GCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGC > 1:899773/1‑70 CTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAG > 1:850090/1‑71 CTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAG > 1:1488164/1‑71 CTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAG > 1:3544310/1‑71 GGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCG > 1:1872493/1‑71 GCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGG < 1:439247/70‑1 GCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGG < 1:438590/70‑1 GCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGG < 1:3710008/70‑1 GCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGG < 1:2888376/70‑1 GCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAG > 1:2420299/1‑69 GGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTAT < 1:2285843/71‑1 GGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTA > 1:1647050/1‑70 GGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTA > 1:1648260/1‑70 GGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTA > 1:2429205/1‑70 GGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGT > 1:361022/1‑69 GACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCC > 1:2765564/1‑71 GGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGA < 1:100153/71‑1 GGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATT < 1:649240/70‑1 GGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTAT < 1:1296656/37‑1 ATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTT < 1:2569407/52‑1 ATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTT < 1:1689456/52‑1 ATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTT < 1:3631799/52‑1 TCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATTACTC < 1:3460942/71‑1 CGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATTACTCT > 1:2660471/1‑71 CGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATTACTCT > 1:548203/1‑71 CGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATTACTCT > 1:3142858/1‑71 CGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCAGATATGA‑TTTAACGTGCCGATGAATTACTCT > 1:3337319/1‑71 GCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATTACTCT < 1:1193756/70‑1 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATTACTCTCA > 1:2406673/1‑71 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATTACTCTCA > 1:1355768/1‑71 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA > 1:1750583/1‑45 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA > 1:2575836/1‑45 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA > 1:863889/1‑45 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTTAACGTGCCGATGAATTACTCTCA > 1:3407446/1‑71 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATTACTCTCAC > 1:2510162/1‑71 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATTACTCTCAC > 1:439690/1‑71 GCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018642‑2018571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTTAACGTGCCGATGAATTACTCTCAC > W3110S.gb/2519723‑2519791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |