| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 183922 = | 64 (0.840) | 43 (0.720) +TTATAACATTT |
18/78 | NT | 43.5% | intergenic (+8/‑29) | rnhB/dnaE | ribonuclease HII, degrades RNA of DNA‑RNA hybrids/DNA polymerase III alpha subunit |
| ? | minE | 974451 = | 79 (1.040) | intergenic (+203/+789) | lsrB/ydeH | AI2 transporter/conserved hypothetical protein | |||||
Only 100 of 130 total aligned reads displayed.
ACCGAACACCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCA > minE/183855‑183985 | aCCGAACACCATCGGAGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCg < 1:1000625/71‑1 (MQ=255) ccGAACACCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCga < 1:3989919/71‑1 (MQ=255) cGAACACCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTc > 1:4380525/1‑68 (MQ=255) acacCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGAtt < 1:37851/71‑1 (MQ=255) cacCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGCGTCGAGAtt > 1:3481116/1‑70 (MQ=255) aTCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTa < 1:1561077/71‑1 (MQ=255) cGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTa > 1:4346977/1‑65 (MQ=255) ggCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTc > 1:441730/1‑57 (MQ=255) ggCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTc > 1:3796925/1‑57 (MQ=255) gcAGCTTTGGGTCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCgg < 1:867535/71‑1 (MQ=255) gcAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTaa < 1:4107274/66‑1 (MQ=255) aGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCga < 1:3161698/54‑1 (MQ=255) gCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCga < 1:3422674/53‑1 (MQ=255) cTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAg < 1:1573490/59‑1 (MQ=255) tGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTg < 1:4329630/70‑1 (MQ=255) tGGGCCGGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTg > 1:603046/1‑70 (MQ=255) gggCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTg > 1:968734/1‑69 (MQ=255) ggCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGATATTAAGTAAACCGGAATCTGAAg < 1:2360068/71‑1 (MQ=255) ggCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAAc > 1:1761235/1‑59 (MQ=255) cTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATg > 1:3007281/1‑71 (MQ=255) tCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGt < 1:932938/69‑1 (MQ=255) tCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCt > 1:2917724/1‑71 (MQ=255) tCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCt > 1:4306253/1‑71 (MQ=255) aaaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGTGATTAAGTAAACCGGAATCTGAAGATGTCTg < 1:4154267/70‑1 (MQ=255) aaaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCg > 1:2170542/1‑53 (MQ=255) aaaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTg > 1:2772831/1‑70 (MQ=255) aaaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGa < 1:2536623/71‑1 (MQ=255) cgcgCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAAc > 1:3069557/1‑70 (MQ=255) gcgcACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGaa < 1:2565399/58‑1 (MQ=255) ggagaaaataaaattaaaatgttataaGTCGAGATTAAGTaaa < 1:3314663‑M1/16‑1 (MQ=255) ggagaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGa < 1:4675215‑M1/27‑1 (MQ=255) gagaaaataaaattaaaatgttataaGTCGAGATTAAGTa < 1:1107112‑M1/14‑1 (MQ=255) gagaaaataaaattaaaatgttataaGTCGAGATTAAGTAAAc < 1:4210348‑M1/17‑1 (MQ=255) gagaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCt < 1:3149283‑M1/25‑1 (MQ=255) gagaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa > 1:4493131‑M1/27‑54 (MQ=255) gagaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGAtga < 1:1107873‑M1/33‑2 (MQ=255) cTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAAc < 1:2252602/42‑1 (MQ=255) agaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACcgt > 1:4468713‑M1/26‑44 (MQ=255) agaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCg > 1:3485207‑M1/26‑44 (MQ=255) agaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa > 1:414829‑M1/26‑53 (MQ=255) agaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAgatgacc > 1:3230962‑M1/26‑57 (MQ=255) agaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGa < 1:1853624‑M1/30‑1 (MQ=255) tGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCgg < 1:626308/44‑1 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTaa < 1:4334917‑M1/11‑1 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGt < 1:1063823‑M1/13‑1 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGTAAAc > 1:4038345‑M1/25‑41 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGTAAAc > 1:4658500‑M1/25‑41 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAg > 1:962985‑M1/25‑53 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAg > 1:4208620‑M1/25‑53 (MQ=255) gggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGaa > 1:3637687/1‑51 (MQ=255) gggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGa > 1:3893012/1‑53 (MQ=255) aaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa > 1:1559001‑M1/24‑51 (MQ=255) aaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGATg > 1:841039‑M1/24‑55 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAAc > 1:4088001/1‑39 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg > 1:2742504/1‑70 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg > 1:1510278/1‑70 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg > 1:2853027/1‑70 (MQ=255) aaataaaattaaaatgttataaGTCGAGATTAAGTaa > 1:134927‑M1/23‑37 (MQ=255) aaataaaattaaaatgttataaGTCGAGATTAAGTAAACCg < 1:3328213‑M1/19‑1 (MQ=255) aaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATc > 1:1027900‑M1/23‑46 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCgg > 1:2660925‑M1/22‑41 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAAt < 1:438331‑M1/23‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCtgaata < 1:2268233‑M1/30‑3 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTg < 1:3875556‑M1/26‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa < 1:2958266‑M1/28‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAg < 1:2229113‑M1/29‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGATg < 1:566791‑M1/32‑1 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTaa > 1:4435076‑M1/21‑35 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGa > 1:1082273‑M1/21‑41 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGa > 1:2722192‑M1/21‑41 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa > 1:2915221‑M1/21‑48 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAg > 1:2310649‑M1/21‑49 (MQ=255) aCTTGCCTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTac < 1:1644043/71‑1 (MQ=255) taaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGa < 1:3817326‑M1/30‑1 (MQ=255) taaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGAt > 1:4600336‑M1/20‑50 (MQ=255) ttGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAAc < 1:3461680/57‑1 (MQ=255) ttGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTaca > 1:4039425/1‑70 (MQ=255) aaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa < 1:3891029‑M1/28‑1 (MQ=255) aaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGa > 1:3967748‑M1/18‑44 (MQ=255) gCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGa > 1:2039190/1‑46 (MQ=255) aattaaaatgttataaGTCGAGATTAAGTAAACCTGAATCTGa > 1:4482927‑M1/17‑43 (MQ=255) aattaaaatgttataaGTCGAGATTAAGTAAACCGGAAt > 1:2893197‑M1/17‑39 (MQ=255) aaaatgttataaGTCGAGATTAAGTAAACCGGAATCt < 1:3772710‑M1/25‑1 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTa > 1:3078892/1‑61 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACAcc > 1:3638859/1‑65 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACAcc > 1:3316199/1‑65 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACAcc > 1:2481339/1‑65 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACAcc > 1:764973/1‑65 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACAcc > 1:2475923/1‑65 (MQ=255) tGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGa > 1:1446677/1‑40 (MQ=255) tGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg < 1:3911751/58‑1 (MQ=255) aatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa > 1:684316‑M1/11‑38 (MQ=255) gATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGaa < 1:2142204/37‑1 (MQ=255) aTTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTg < 1:3960410/70‑1 (MQ=255) ttCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGca > 1:272324/1‑71 (MQ=255) gttataaGTCGAGATTAAGTAAACCGGAATCTGaa > 1:4056506‑M1/8‑35 (MQ=255) cTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGca > 1:2061322/1‑69 (MQ=255) tgtgTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTg > 1:1306236/1‑65 (MQ=255) tgtgTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTg > 1:1970687/1‑65 (MQ=255) gtgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTa > 1:1005838/1‑52 (MQ=255) | ACCGAACACCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCA > minE/183855‑183985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |