| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 45 (0.910) | 27/98 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173510‑2173565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGTG < W3110S.gb/3932933‑3932864 AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCC < 1:1134605/71‑1AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCC < 1:2390122/71‑1AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCC < 1:1862512/71‑1 CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTG < 1:2605113/56‑1 CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTG < 1:2983235/56‑1 AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATT < 1:597385/70‑1 AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAA > 1:2306491/1‑68 GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTATGATCACACTTCGGTGGTGCCGATTTTAAATTCA < 1:2160190/71‑1 CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAA < 1:4403741/63‑1 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGAGTTTAAATTCAAC > 1:2702424/1‑68 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGA > 1:4323014/1‑71 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAAC > 1:679994/1‑67 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGAC > 1:788159/1‑71 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAA > 1:4389471/1‑60 AGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGT > 1:1187063/1‑70 GGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGA < 1:2210215/48‑1 GCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTA < 1:3491542/70‑1 GCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG > 1:616128/1‑41 CCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATA < 1:1808993/71‑1 TGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGC > 1:1789341/1‑71 TGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAAC > 1:3632325/1‑55 TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGG < 1:3780913/71‑1 TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGG < 1:148716/71‑1 TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGG < 1:26295/71‑1 TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGG > 1:561120/1‑71 TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTA < 1:3997806/45‑1 ATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCA > 1:4788504/1‑52 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCA < 1:2551278/47‑1 TTACGTGTGTAGGATCACACTTCGGTGGTGCCGATTT < 1:2930813/37‑1 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG > 1:2693179/1‑70 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG > 1:4051186/1‑70 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGAC > 1:3290093/1‑68 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAA > 1:4178837/1‑41 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTT < 1:3537953/37‑1 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTT < 1:1360551/37‑1 ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG > 1:3740914/1‑68 ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATT > 1:981171/1‑41 CGTGGGTAGTATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGA < 1:346670/71‑1 TGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAA < 1:4223027/36‑1 GGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCA < 1:4491961/39‑1 GGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCA < 1:2407949/39‑1 GTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGT < 1:2828340/71‑1 GGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCA > 1:4232120/1‑70 GGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGT < 1:1246372/68‑1 GGATCACACTTCGGTGGTGCCGATTTTAAATTCAAC < 1:1748063/36‑1 GATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAG < 1:2485566/63‑1 TCACACTTCGGTGGTGCCGATTTTAGATTCAACCAGACGGTTATAAAG < 1:1108035/48‑1 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGG > 1:2769012/1‑71 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGG > 1:495556/1‑71 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAG < 1:4471774/48‑1 ACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGTG > 1:1399266/1‑71 ACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGT < 1:317403/70‑1 AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173510‑2173565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGTG < W3110S.gb/3932933‑3932864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |