| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 45 (0.910) | 27/98 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAA > W3110S.gb/2173499‑2173635 | cAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa > 1:907005/1‑71 (MQ=34) gAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCt < 1:840462/69‑1 (MQ=255) gAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCt < 1:1400183/69‑1 (MQ=255) gAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTc > 1:1889154/1‑71 (MQ=255) aaTTTGAAAACAAGAACCTCGCTTTGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTg < 1:1253981/70‑1 (MQ=255) tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt < 1:1120039/71‑1 (MQ=255) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa > 1:127690/1‑56 (MQ=35) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:3506538/69‑1 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:2350633/69‑1 (MQ=255) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:1793729/71‑1 (MQ=255) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt < 1:3407084/38‑1 (MQ=37) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt < 1:3066216/38‑1 (MQ=37) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTg < 1:4092335/50‑1 (MQ=255) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTg < 1:1973298/50‑1 (MQ=255) ttAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:2936322/57‑1 (MQ=255) tAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcgc > 1:1492913/1‑71 (MQ=255) tAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcgc > 1:1422106/1‑71 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:4334146/1‑57 (MQ=255) gtgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt > 1:3455722/1‑49 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt < 1:3778909/40‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:208308/36‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:1730283/36‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:3523648/36‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt > 1:365165/1‑40 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:1972663/1‑42 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:3813455/1‑42 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:3785744/1‑42 (MQ=255) aCGTGGGTAGGATCAGTCATACCTTCGTGGATCAtt > 1:4418614/1‑36 (MQ=255) cGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTG‑TTTTTGgcgcgc > 1:3159304/1‑71 (MQ=255) tGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa < 1:2610090/37‑1 (MQ=255) gggTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTg > 1:1860873/1‑71 (MQ=255) aGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGc > 1:1087718/1‑69 (MQ=255) aGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGc > 1:1742149/1‑69 (MQ=255) aGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGc > 1:2493508/1‑69 (MQ=255) aGGATCAGTCATCCCTTCGTGGATCATTTTGACTG‑‑GCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGc > 1:4242035/1‑71 (MQ=255) gATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGtt < 1:3288146/52‑1 (MQ=255) gATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGtt < 1:3144068/52‑1 (MQ=255) aTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTAt > 1:4491375/1‑45 (MQ=255) tCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGtttt > 1:824540/1‑52 (MQ=255) tCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCt > 1:1380223/1‑70 (MQ=255) tCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTg < 1:394080/71‑1 (MQ=255) cAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgc < 1:3531904/58‑1 (MQ=255) aGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGaa < 1:3622614/71‑1 (MQ=255) aGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGaa < 1:2351804/71‑1 (MQ=255) aGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGa < 1:1865776/70‑1 (MQ=255) aGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGa < 1:79871/70‑1 (MQ=255) | CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAA > W3110S.gb/2173499‑2173635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |