| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 45 (0.910) | 27/98 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 108 total aligned reads displayed.
CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAA > W3110S.gb/3932864‑3933001 | cACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:1399266‑M2/1‑70 (MQ=255) aCCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt < 1:317403‑M2/70‑2 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:495556‑M2/1‑68 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc > 1:4232120‑M2/1‑64 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCgg < 1:4684205‑M2/11‑1 (MQ=255) aCGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctac < 1:2828340‑M2/71‑10 (MQ=255) aCGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:1246372‑M2/68‑7 (MQ=255) acctctgactgagggtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGcc > 1:4510641‑M2/58‑71 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCccgggtc > 1:3173625‑M2/58‑69 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGcc > 1:3735262‑M2/58‑71 (MQ=255) ctctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:2485566‑M2/63‑6 (MQ=255) tctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatactacccacg < 1:346670‑M2/71‑15 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCg > 1:2956215‑M2/54‑70 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc > 1:3431290‑M2/54‑71 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:4671958‑M2/53‑71 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:581350‑M2/53‑71 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:1059019‑M2/53‑71 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt < 1:3497846‑M2/19‑1 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:2693179‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:4051186‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:3740914‑M2/1‑53 (MQ=255) tgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa > 1:642036‑M2/49‑70 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa > 1:4402133‑M2/48‑69 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa > 1:3583214‑M2/48‑69 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa > 1:2874044‑M2/48‑69 (MQ=255) gTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:3290093‑M2/1‑51 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:3780913‑M2/71‑24 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga > 1:561120‑M2/1‑48 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:26295‑M2/71‑24 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:239592‑M2/22‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:2065084‑M2/29‑1 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca > 1:1789341‑M2/1‑46 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga < 1:4471774‑M2/48‑4 (MQ=255) cTTTATAACCGTCTGGTTGAATCTAAAATCGGCACCACCGAAGTGtga < 1:1108035‑M2/48‑4 (MQ=255) tactcacttagccgcgtgtccactattgcttggtaagatcAGTGATCCCg > 1:1144382‑M2/41‑50 (MQ=255) tataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacagg < 1:1808993‑M2/71‑30 (MQ=255) tcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa < 1:2218714‑M2/24‑1 (MQ=255) tcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGa < 1:1022098‑M2/30‑1 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggc < 1:3491542‑M2/70‑31 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcct > 1:1187063‑M2/1‑38 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGCTCCCGGGCCTCGCTGaaaa > 1:152699‑M2/33‑56 (MQ=255) gTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:788159‑M2/1‑35 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATcc > 1:2737440‑M2/32‑39 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGaa > 1:2918640‑M2/32‑62 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGa < 1:193024‑M2/39‑1 (MQ=255) tCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcg > 1:4323014‑M2/1‑34 (MQ=255) agccgcgtgtccactattgctggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGaa > 1:4267816‑M2/31‑61 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatat > 1:4788504‑M2/1‑32 (MQ=255) gcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:3127655‑M2/28‑51 (MQ=255) gcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:3384482‑M2/28‑51 (MQ=255) gcgtgtccactattgctgggtaagatcAGTGATACCGGGCCTCGCTGaaaa > 1:2843938‑M2/28‑51 (MQ=255) gTTGAATTTAAACTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcga > 1:2702424‑M2/1‑30 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcg > 1:679994‑M2/1‑30 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca > 1:3632325‑M2/1‑30 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:1748063‑M2/36‑7 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:2551278‑M2/47‑20 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctaccc < 1:4491961‑M2/39‑12 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctaccc < 1:2407949‑M2/39‑12 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcatacccacgtaatatggacacaggcctaagcgaggttc < 1:2160190‑M2/71‑44 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:4090248‑M2/48‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa > 1:2398936‑M2/23‑70 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:1840025‑M2/48‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGCTaaa < 1:345032‑M2/49‑1 (MQ=255) aaTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct < 1:597385‑M2/70‑45 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:4389471‑M2/1‑24 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:4178837‑M2/1‑24 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:3367112‑M2/40‑1 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaaa < 1:4076278‑M2/50‑1 (MQ=255) ttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgagg < 1:4403741‑M2/63‑41 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1078103‑M2/29‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:414885‑M2/29‑1 (MQ=255) tAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:3997806‑M2/45‑24 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:3295274‑M2/17‑40 (MQ=255) aaaTCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:1360551‑M2/37‑18 (MQ=255) aaaTCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:3537953‑M2/37‑18 (MQ=255) aaaTCGGCACCACCGAAGTGtgatcctacacacgtaa < 1:2930813‑M2/37‑18 (MQ=255) ttgcttggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:3564545‑M2/55‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:1310925‑M2/16‑39 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:1195765‑M2/22‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:4694271‑M2/40‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:3014333‑M2/55‑1 (MQ=255) tgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAc > 1:1050493‑M2/15‑71 (MQ=255) tgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAc > 1:4421598‑M2/15‑71 (MQ=255) tCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcc < 1:2210215‑M2/48‑32 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaatt < 1:2390122‑M2/71‑57 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaatt < 1:1862512‑M2/71‑57 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaatt < 1:1134605‑M2/71‑57 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggc > 1:616128‑M2/1‑11 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttg < 1:2983235‑M2/56‑47 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttg < 1:2605113‑M2/56‑47 (MQ=255) aagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATc > 1:2965671‑M2/7‑71 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:2703775‑M2/6‑56 (MQ=255) gatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTg > 1:4007940‑M2/5‑71 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:523652‑M2/38‑1 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa > 1:582288‑M2/3‑42 (MQ=255) aGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:4007839/1‑54 (MQ=255) aGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGt > 1:4189066/1‑70 (MQ=255) gTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTaa < 1:577178/71‑1 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:2160937/47‑1 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa > 1:2422045/1‑69 (MQ=255) | CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAA > W3110S.gb/3932864‑3933001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |