New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 713954	33 (1.180)	60 (2.140)	28/100	NT	56.1%	coding (546/546 nt)	seqA	regulatory protein for replication initiation
	?	W3110S.gb	2809398 =	61 (2.180)					intergenic (+63/‑28)	ygaH/mprA	predicted inner membrane protein/DNA‑binding transcriptional regulator

ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/713886‑713954 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTA  >  W3110S.gb/2809398‑2809461                                                                                                                                       ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG                                                                >  1:2075815/1‑71  TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGG                                                               >  1:1083952/1‑71  TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGG                                                               >  1:2623312/1‑71  TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG                                                                >  1:2584280/1‑70      ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                           <  1:172051/71‑1         CATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                        <  1:926862/71‑1         CATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                        <  1:240885/71‑1          ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                       <  1:612201/71‑1          ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                       <  1:1867812/71‑1             ATGCAGTCGATGCTATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                     >  1:441068/1‑70             ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                     >  1:1047306/1‑70              TGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                   <  1:1222550/71‑1                CAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAG                                                 >  1:1528191/1‑71                CAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAG                                                 >  1:2634303/1‑71                  GTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                               <  1:1737372/71‑1                   TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                               >  1:2077346/1‑70                   TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                               >  1:2026951/1‑70                    CGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                             >  1:2553229/1‑71                    CGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                             >  1:1741211/1‑71                        GCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACC                                         >  1:2306662/1‑71                         CAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                     >  1:2528426/1‑58                         CAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                     >  1:1473416/1‑58                         CAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGCCTGAAATTAA                                                     >  1:2446647/1‑58                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                       <  1:597187/71‑1                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                       <  1:2456940/71‑1                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                       <  1:2405841/71‑1                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                       <  1:1521376/55‑1                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                     >  1:676303/1‑71                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                     >  1:1723918/1‑71                             TCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAAT                                    >  1:1940019/1‑71                             TCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                     >  1:696271/1‑70                               CCGTCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                   <  1:2160296/70‑1                               CCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                   <  1:1899414/70‑1                               CCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                   <  1:2212539/70‑1                               CCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                   <  1:174025/70‑1                                   CGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAG                              >  1:1820854/1‑71                                     GAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGAT                                <  1:1859837/67‑1                                      AATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                           <  1:69687/39‑1                                      AATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                           <  1:1172026/39‑1                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                         >  1:1728528/1‑71                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                         <  1:1656399/71‑1                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                         >  1:411164/1‑71                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                          <  1:1461383/70‑1                                         TGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                               <  1:804529/48‑1                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                        >  1:280265/1‑70                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATA                               >  1:220139/1‑63                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATA                               >  1:324663/1‑63                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGA                                 >  1:3309/1‑61                                                GAAGGTTTGCTGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCC                  >  1:1833766/1‑70                                                GAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCC                  >  1:2553233/1‑70                                                GAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCC                  >  1:1706941/1‑70                                                GAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCC                  >  1:524595/1‑70                                                  AGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                          >  1:1900970/1‑60                                                  AGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                          >  1:405236/1‑60                                                     TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTG             >  1:65423/1‑70                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA         >  1:1676099/1‑70                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA         >  1:664095/1‑70                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA         <  1:1548378/70‑1                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA         <  1:1659871/70‑1                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA         >  1:1088608/1‑70                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA         <  1:1192164/70‑1                                                              CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                        <  1:2106475/50‑1                                                                ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTA  >  1:546901/1‑70                                                                ATCTAAAGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTA  >  1:74206/1‑70                                                                 TCTAACGGCTGAAATTAATGAGGTCATACCCAAATGG                                  <  1:1678796/37‑1                                                                 TCTAACGGCTGAAATTAATGAGGTCATACCCAAATGG                                  <  1:2122049/37‑1                                                                   TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                        <  1:497536/45‑1                                                                                                                                       ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/713886‑713954 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTA  >  W3110S.gb/2809398‑2809461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.