| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 713954 | 33 (1.180) | 60 (2.140) | 28/100 | NT | 56.1% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 61 (2.180) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
Only 100 of 109 total aligned reads displayed.
TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGT > W3110S.gb/713884‑714021 | tGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa < 1:192386/71‑1 (MQ=255) aTCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcg > 1:2075815‑M1/1‑69 (MQ=255) tCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcgg > 1:1083952‑M1/1‑68 (MQ=255) tCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcgg > 1:2623312‑M1/1‑68 (MQ=255) tCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcg > 1:2584280‑M1/1‑68 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGt > 1:1649868/1‑71 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGt > 1:2564350/1‑71 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:172051‑M1/71‑8 (MQ=255) catcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaat < 1:240885‑M1/71‑11 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:1867812‑M1/71‑12 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:612201‑M1/71‑12 (MQ=255) atGCAGTCGATGCTATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:441068‑M1/1‑57 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:1047306‑M1/1‑57 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgaca > 1:1989867/1‑70 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:1222550‑M1/71‑16 (MQ=255) cAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgag > 1:2634303‑M1/1‑54 (MQ=255) cAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgag > 1:1528191‑M1/1‑54 (MQ=255) gTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggt < 1:1737372‑M1/71‑20 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggt > 1:2026951‑M1/1‑51 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggt > 1:2077346‑M1/1‑51 (MQ=255) cGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:2553229‑M1/1‑50 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:1370082/71‑1 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacc > 1:2306662‑M1/1‑46 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:1473416‑M1/1‑45 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:2528426‑M1/1‑45 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:597187‑M1/71‑28 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:2405841‑M1/71‑28 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:2456940‑M1/71‑28 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:1521376‑M1/55‑12 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:1807806/1‑69 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:1778371/1‑69 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:2407540/1‑69 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:914196/1‑69 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:1271679/1‑69 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:1212517/1‑69 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:1723918‑M1/1‑42 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:676303‑M1/1‑42 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg < 1:540404/49‑1 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg < 1:2397825/49‑1 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAAt > 1:1852172/1‑69 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATgg > 1:1554732/1‑71 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATgg > 1:1859987/1‑71 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaat > 1:1940019‑M1/1‑41 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:696271‑M1/1‑41 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATgg > 1:890873/1‑70 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaagg > 1:214650/1‑57 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGc > 1:361862/1‑70 (MQ=255) ccGTCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:2160296‑M1/70‑32 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:1899414‑M1/70‑32 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:174025‑M1/70‑32 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:2212539‑M1/70‑32 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATc > 1:210483/1‑71 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATc > 1:1482930/1‑71 (MQ=255) cggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatag > 1:1820854‑M1/1‑35 (MQ=255) gAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggat < 1:1859837‑M1/67‑35 (MQ=255) aaTTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:69687‑M1/39‑8 (MQ=255) aaTTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:1172026‑M1/39‑8 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt > 1:411164‑M1/1‑30 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt > 1:1728528‑M1/1‑30 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt < 1:1656399‑M1/71‑42 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg < 1:1461383‑M1/70‑41 (MQ=255) tgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggt < 1:804529‑M1/48‑20 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:280265‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggata > 1:220139‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggata > 1:324663‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga > 1:3309‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:2363599/1‑54 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt < 1:1996795/70‑1 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt < 1:1511086/70‑1 (MQ=255) gaAGGTTTGCTGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcc > 1:1833766‑M1/1‑22 (MQ=255) gaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcc > 1:524595‑M1/1‑22 (MQ=255) gaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcc > 1:2553233‑M1/1‑22 (MQ=255) gaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcc > 1:1706941‑M1/1‑22 (MQ=255) gaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg < 1:2324700/66‑1 (MQ=255) aGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:1900970‑M1/1‑20 (MQ=255) aGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:405236‑M1/1‑20 (MQ=255) tttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattg > 1:65423‑M1/1‑17 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAAcc > 1:134442/1‑70 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCt > 1:1523436/1‑71 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCt > 1:1275929/1‑71 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca > 1:664095‑M1/1‑13 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:1192164‑M1/70‑58 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:1548378‑M1/70‑58 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca > 1:1088608‑M1/1‑13 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca > 1:1676099‑M1/1‑13 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:1659871‑M1/70‑58 (MQ=255) ggAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac < 1:1626656/71‑1 (MQ=255) cTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:2106475‑M1/50‑43 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaaca < 1:1586886/71‑1 (MQ=255) aTCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgcta > 1:546901‑M1/1‑6 (MQ=255) aTCTAAaggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgcta > 1:74206‑M1/1‑6 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatgg < 1:2122049‑M1/37‑33 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatgg < 1:1678796‑M1/37‑33 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:497536‑M1/45‑43 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa > 1:384583/1‑54 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa > 1:803053/1‑54 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa > 1:2041289/1‑54 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa > 1:2101184/1‑54 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa > 1:436822/1‑54 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATACACAATCGTGCAGGCCAACCTGCACAACAGAGt > 1:1161980/1‑70 (MQ=255) | TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGT > W3110S.gb/713884‑714021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |