New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 23679843 (0.790)43 (1.770)
+TTTAATATCAGTAAACCGGACATAACC
27/46 NT 67.3% coding (732/732 nt) dnaQ DNA polymerase III epsilon subunit
?W3110S.gb 4124504 = 50 (0.920)intergenic (+106/‑1) damX/dam hypothetical protein/DNA adenine methylase

Only 100 of 144 total aligned reads displayed.

GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/236729‑236798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC  >  W3110S.gb/4124504‑4124571
                                                                      |||||||||||||||||||||||||||                                                                    
  TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                                                                                              <  1:293316/71‑1
  TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                                                                                              <  1:645726/71‑1
  TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATT                                                                                               >  1:1956292/1‑70
   TGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATT                                                                                               >  1:2442565/1‑69
      AGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA                                                                                          <  1:2795364/71‑1
         TCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT                                                                                         >  1:1815594/1‑69
          CATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAG                                                                                      >  1:3455475/1‑71
          CATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAG                                                                                      >  1:4497893/1‑71
          CATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAG                                                                                      >  1:3449395/1‑71
              AAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA                                                                                  >  1:1927105/1‑71
              AAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAA                                                                                   <  1:5087418/70‑1
                 CCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG                                                                               >  1:2940387/1‑71
                  CCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGG                                                                              <  1:4664784/71‑1
                   CGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGA                                                                             >  1:3205971/1‑71
                   CGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGA                                                                             >  1:2155542/1‑71
                    GTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGA                                                                             <  1:2066824/70‑1
                    GTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGA                                                                             >  1:491966/1‑70
                      CTCGATCTGGTGCAGAAGAAACGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA                                                                                          >  1:2095422/1‑55
                       TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAGTTTAATATCAGTAAACCGGACAT                                                                          >  1:2171217/1‑70
                       TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT                                                                          >  1:567654/1‑70
                       TCGATCTCGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAGTTTAATATCAGTAAACCGGACAT                                                                          >  1:3253726/1‑70
                        CGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAA                                                                        >  1:4063012/1‑71
                         GATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT                                                                          <  1:2822070/68‑1
                               GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCC                                                                     <  1:2498013/67‑1
                                 GCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAAT                                                                                           <  1:3095711/43‑1
                                  CAGAAGATAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAAT                                                                                           <  1:672678/42‑1
                                  CAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAG                                                               >  1:2886272/1‑70
                                  CAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAG                                                                                      >  1:4045088/1‑47
                                   AGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGA                                                              >  1:1486107/1‑70
                                    GAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA                                                            <  1:4806601/71‑1
                                    GAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA                                                            <  1:2022007/71‑1
                                    GAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA                                                                                    <  1:2151019/47‑1
                                      AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA                                                          <  1:587099/71‑1
                                       GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAAT                                                         >  1:4937901/1‑71
                                       GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAAT                                                         >  1:2696470/1‑71
                                       GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT                                                                          <  1:2055915/54‑1
                                        AAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCAT                                                                   <  1:2398531/60‑1
                                        AAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAAC                                                                                 >  1:585053/1‑46
                                         AAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAG                                                                                      >  1:5134133/1‑40
                                          AGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGA                                                                 >  1:3531820/1‑60
                                            GCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA                                                                                  >  1:136833/1‑41
                                             CGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCT                                                   >  1:583774/1‑71
                                              GGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTT                                                  <  1:4172989/71‑1
                                                AAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTT                                                >  1:5037736/1‑71
                                                  GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAA                                                           <  1:1307762/58‑1
                                                   TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                             <  1:374796/71‑1
                                                   TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                             <  1:2406328/71‑1
                                                   TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                             <  1:842983/71‑1
                                                   TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCCCTTTTTTG                                             <  1:1121905/71‑1
                                                    TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                             >  1:2996269/1‑70
                                                    TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAAT                                                         >  1:5143649/1‑58
                                                     GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                             >  1:1223970/1‑69
                                                     GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                             >  1:1007692/1‑69
                                                        TCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCG                                                     <  1:4442979/58‑1
                                                          TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTG                                        <  1:2247292/69‑1
                                                            gccAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG                                      >  1:1382675/4‑69
                                                            GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA                                    <  1:5076079/71‑1
                                                            GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA                                    <  1:1109712/71‑1
                                                            GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG                                      >  1:3864189/1‑69
                                                            GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG                                      <  1:2219365/69‑1
                                                               AGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGG                                 <  1:2972579/71‑1
                                                                 CATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG                                      <  1:417445/64‑1
                                                                   TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC                              <  1:2183298/70‑1
                                                                   TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAG                                          >  1:2202898/1‑58
                                                                   TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTT                                                <  1:5110468/52‑1
                                                                   TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTT                                                <  1:5163283/52‑1
                                                                   TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTT                                                <  1:102552/52‑1
                                                                    AATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC                              >  1:2722973/1‑69
                                                                     ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA                                                          <  1:886286/40‑1
                                                                     ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA                                                          <  1:3347764/40‑1
                                                                           TATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC                              <  1:3848651/62‑1
                                                                           TATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGC                                     <  1:3706845/55‑1
                                                                             TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCT                   >  1:4666664/1‑71
                                                                             TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCT                   >  1:2559012/1‑71
                                                                               AGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTG                  <  1:2377462/70‑1
                                                                                GTAAACCGGACATAACCCATGAAGAAAAATCGAGCTTTTTTGAAGTGGGCAGGGGGCA                             <  1:1551338/58‑1
                                                                                 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCC                      <  1:1416147/64‑1
                                                                                 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA                                    <  1:1037286/50‑1
                                                                                 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA                                            <  1:3742131/42‑1
                                                                                 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTT                                                <  1:4706901/38‑1
                                                                                 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTT                                                <  1:2179838/38‑1
                                                                                  AAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTT               >  1:1701499/1‑70
                                                                                   AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA             >  1:3162100/1‑71
                                                                                   AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAA                            >  1:1111195/1‑56
                                                                                   AACCGGACATAACCCATGAAGAAAAATCGCGCTTTT                                                >  1:4837248/1‑36
                                                                                   AACCGGACATAACCCATGAAGAAAAATCGCGCTTTT                                                >  1:481743/1‑36
                                                                                      CGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA                                            <  1:2244396/37‑1
                                                                                       GGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT         <  1:5077043/71‑1
                                                                                       GGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCC                      <  1:412853/58‑1
                                                                                           ATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGAT            <  1:5003269/64‑1
                                                                                            TAACCCATGAAGAAAATTCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAT                        <  1:612089/51‑1
                                                                                            TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAA    <  1:296990/71‑1
                                                                                             AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAA    <  1:1562398/70‑1
                                                                                             AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGA          >  1:3560892/1‑64
                                                                                             AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG                                      >  1:2640606/1‑36
                                                                                              ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC  >  1:1961750/1‑71
                                                                                              ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC  >  1:542203/1‑71
                                                                                              ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC  <  1:313135/71‑1
                                                                                              ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC  >  1:4454350/1‑71
                                                                                              ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAA   <  1:608317/70‑1
                                                                      |||||||||||||||||||||||||||                                                                    
GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/236729‑236798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC  >  W3110S.gb/4124504‑4124571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.