| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 43 (0.790) | 43 (1.770) +TTTAATATCAGTAAACCGGACATAACC |
27/46 | NT | 67.3% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 50 (0.920) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 154 total aligned reads displayed.
AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG > W3110S.gb/4124435‑4124572 | ctggtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCa > 1:1297553‑M2/70‑71 (MQ=255) gCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATg > 1:3243749/1‑69 (MQ=255) cagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaag > 1:2886272‑M2/64‑70 (MQ=255) agaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaaga > 1:1486107‑M2/63‑70 (MQ=255) gaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa < 1:2022007‑M2/10‑1 (MQ=255) gaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa < 1:4806601‑M2/10‑1 (MQ=255) aaGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaa > 1:2908733/1‑70 (MQ=255) aaGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaa < 1:58812/70‑1 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:587099‑M2/12‑1 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATgaagaa < 1:3606222/68‑1 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:2534949/71‑1 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa > 1:1206184/1‑71 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAAt > 1:4937901‑M2/59‑71 (MQ=255) aaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCAt < 1:2398531‑M2/3‑1 (MQ=255) ggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgc > 1:4948869‑M2/55‑70 (MQ=255) gATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATcgcg < 1:2615170/69‑1 (MQ=255) gaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttt > 1:2125724‑M2/51‑71 (MQ=255) aagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt > 1:5037736‑M2/50‑71 (MQ=255) cTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttttt > 1:3715655/1‑71 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaa < 1:1307762‑M2/11‑1 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:2059151‑M2/24‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:374796‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2406328‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:842983‑M2/25‑1 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:567838‑M2/46‑57 (MQ=255) tCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtttttt > 1:3104243/1‑69 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:1007692‑M2/45‑69 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:2482039/1‑71 (MQ=255) gAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGt > 1:3847824/1‑71 (MQ=255) tctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgcg < 1:4442979‑M2/17‑1 (MQ=255) tggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTg < 1:2247292‑M2/30‑1 (MQ=255) ttCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttttt < 1:40302/60‑1 (MQ=255) ttCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:3945691/1‑69 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:2219365‑M2/32‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:3864189‑M2/38‑69 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:4024514‑M2/38‑69 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:2986916‑M2/32‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:1109712‑M2/34‑1 (MQ=255) gccagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:1382675‑M2/38‑69 (MQ=255) tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCTCGCTTTTTTGAAGTGGGCAg > 1:1184413/1‑71 (MQ=255) cgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:1415033‑M2/35‑1 (MQ=255) gagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt > 1:2243513‑M2/36‑57 (MQ=255) ctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAAt > 1:107079/1‑48 (MQ=255) ctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg > 1:2041975/1‑60 (MQ=255) tcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATgaaga > 1:2964866/1‑42 (MQ=255) agcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg < 1:2972579‑M2/37‑1 (MQ=255) cataatttaatatcagtaaaccggacataaccCATGAAGAAAAATGGCGCTTTTTTGAAGTGGGc > 1:1884356‑M2/33‑65 (MQ=255) cataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:417445‑M2/32‑1 (MQ=255) cacaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTgg < 1:3441531/63‑1 (MQ=255) cacaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggggg > 1:739697/1‑71 (MQ=255) acaGCCGGAGAAGGTGTAATTGGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:4146595/56‑1 (MQ=255) acaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:3883050/71‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt < 1:5163283‑M2/22‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt < 1:5110468‑M2/22‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:2202898‑M2/31‑58 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:2183298‑M2/40‑1 (MQ=255) aatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc > 1:2722973‑M2/30‑69 (MQ=255) gCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:1014515/1‑71 (MQ=255) gagaAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:89064/36‑1 (MQ=255) gagaAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:4106909/36‑1 (MQ=255) tatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:3706845‑M2/33‑1 (MQ=255) tatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:3848651‑M2/40‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCt > 1:2559012‑M2/21‑71 (MQ=255) ggTGTAATTAGTTAGTCAGCATGAAGAAAAATcgc > 1:566361/1‑35 (MQ=255) gtgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:2440200/43‑1 (MQ=255) tgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCt < 1:3508641/71‑1 (MQ=255) tgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCt < 1:2523441/71‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCtttt < 1:2179838‑M2/22‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCtttt < 1:4706901‑M2/22‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:3742131‑M2/26‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:1037286‑M2/34‑1 (MQ=255) gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:851038/1‑71 (MQ=255) tAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGCCAAGTATCCCCTGCTtg < 1:4674084/71‑1 (MQ=255) aaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:1701499‑M2/16‑70 (MQ=255) aaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:2550825‑M2/16‑70 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCtttt > 1:481743‑M2/15‑36 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCaa > 1:1111195‑M2/15‑56 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:3162100‑M2/15‑71 (MQ=255) aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa > 1:4324878/1‑40 (MQ=255) ttagttagTCAGCATGAAGAAAAATCGCGCtttttt < 1:288998/36‑1 (MQ=255) ggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcc < 1:412853‑M2/48‑1 (MQ=255) ggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTgatgat < 1:5077043‑M2/61‑1 (MQ=255) agttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:4299206/1‑70 (MQ=255) agttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:2998157/1‑70 (MQ=255) cataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAATATCCCCTGCTTGATGatat > 1:4665756‑M2/8‑70 (MQ=255) agtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGt < 1:2331224/50‑1 (MQ=255) taaccCATGAAGAAAATTCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt < 1:612089‑M2/46‑1 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:2640606‑M2/5‑36 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:3560892‑M2/5‑64 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaa < 1:1562398‑M2/66‑1 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa < 1:608317‑M2/67‑1 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAc < 1:313135‑M2/68‑1 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAc > 1:1961750‑M2/4‑71 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAc > 1:4454350‑M2/4‑71 (MQ=255) aGCATGAAGAAAAGTCGCGCTTTTTTGAAGTGGGCAggg > 1:4054127/1‑39 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:721857/1‑39 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:4864091/1‑39 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg > 1:5016629/1‑71 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat > 1:4932399/1‑58 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:4226050/1‑67 (MQ=255) | AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG > W3110S.gb/4124435‑4124572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |