| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 43 (0.790) | 43 (1.770) +TTTAATATCAGTAAACCGGACATAACC |
27/46 | NT | 67.3% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 50 (0.920) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 163 total aligned reads displayed.
GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > W3110S.gb/236729‑236868 | gATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAt > 1:3753668‑M1/1‑70 (MQ=255) ttGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:645726‑M1/71‑4 (MQ=255) ttGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:293316‑M1/71‑4 (MQ=255) ttGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtt > 1:1956292‑M1/1‑68 (MQ=255) ttGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAAt < 1:4653777/70‑1 (MQ=255) ttGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAAt < 1:343512/70‑1 (MQ=255) cAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaat < 1:5142680‑M1/71‑7 (MQ=255) aGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaata < 1:2795364‑M1/71‑8 (MQ=255) cTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatat > 1:1115861‑M1/1‑62 (MQ=255) cTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCtgtg < 1:181647/71‑1 (MQ=255) tCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatat > 1:1815594‑M1/1‑61 (MQ=255) tCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCtgtg < 1:4006404/70‑1 (MQ=255) tCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCtgtg < 1:3397090/70‑1 (MQ=255) cATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcag > 1:4497893‑M1/1‑60 (MQ=255) cATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcag > 1:2658046‑M1/1‑60 (MQ=255) cATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcag > 1:3455475‑M1/1‑60 (MQ=255) aTGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGaa < 1:3977128/70‑1 (MQ=255) aTGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGaa < 1:3971300/70‑1 (MQ=255) aTGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGa < 1:805995/69‑1 (MQ=255) aTGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGa < 1:1365345/69‑1 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaa < 1:1568822‑M1/71‑16 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaa < 1:5087418‑M1/70‑15 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGa < 1:344003/66‑1 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAgg < 1:5025425/70‑1 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAgg < 1:4950992/70‑1 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGgc > 1:2590888/1‑71 (MQ=255) cccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccg > 1:2940387‑M1/1‑53 (MQ=255) cccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaa < 1:2355308‑M1/68‑16 (MQ=255) ccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCt > 1:3332890/1‑70 (MQ=255) cGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccgga > 1:3205971‑M1/1‑51 (MQ=255) cGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccgga > 1:2432539‑M1/1‑51 (MQ=255) cGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTa > 1:4268478/1‑70 (MQ=255) gTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccgga > 1:4713667‑M1/1‑50 (MQ=255) gTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccgga > 1:491966‑M1/1‑50 (MQ=255) ctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaac > 1:1550206‑M1/1‑48 (MQ=255) ctcGATCTGGTGCAGAAGAAACGCGGAAGTTGCCTCTGGCGAGCATAAtttaata > 1:2095422‑M1/1‑48 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAGtttaatatcagtaaaccggacat > 1:2171217‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat > 1:567654‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa > 1:2007804‑M1/1‑47 (MQ=255) tcGATCTCGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAGtttaatatcagtaaaccggacat > 1:3253726‑M1/1‑47 (MQ=255) cGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCCCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:2541832/1‑69 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat < 1:2822070‑M1/68‑24 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGaaa > 1:2532125/1‑57 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataaccc < 1:2498013‑M1/67‑29 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCg < 1:691546/67‑1 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGAc < 1:4808223/69‑1 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACtt > 1:3477234/1‑71 (MQ=255) cAGAAGATAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaat < 1:672678‑M1/42‑7 (MQ=255) cAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaag > 1:2886272‑M1/1‑36 (MQ=255) cAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcag > 1:4045088‑M1/1‑36 (MQ=255) agaagaAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaaga > 1:1486107‑M1/1‑35 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaa < 1:2022007‑M1/71‑38 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagta < 1:4072873‑M1/47‑14 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagta < 1:2151019‑M1/47‑14 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaat > 1:2696470‑M1/1‑31 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaat > 1:4937901‑M1/1‑31 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAtt > 1:4395819/1‑71 (MQ=255) aaaGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccat < 1:2398531‑M1/60‑31 (MQ=255) aaaGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaac > 1:585053‑M1/1‑30 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcag > 1:5134133‑M1/1‑29 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAttt > 1:5182233/1‑70 (MQ=255) aGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatga > 1:3531820‑M1/1‑28 (MQ=255) cGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgct > 1:583774‑M1/1‑25 (MQ=255) ggAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctt < 1:4172989‑M1/71‑48 (MQ=255) gAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttt > 1:2125724‑M1/1‑23 (MQ=255) aaGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttt > 1:5037736‑M1/1‑22 (MQ=255) gTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttttt < 1:2059151‑M1/71‑52 (MQ=255) gTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaa < 1:1307762‑M1/58‑39 (MQ=255) gTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGc < 1:1664019/47‑1 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg < 1:374796‑M1/71‑53 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg > 1:1007692‑M1/1‑17 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg > 1:1223970‑M1/1‑17 (MQ=255) gCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:4018524/1‑40 (MQ=255) tctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgct < 1:3106476‑M1/60‑47 (MQ=255) tctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcg < 1:4442979‑M1/58‑45 (MQ=255) tctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaa < 1:60710‑M1/52‑39 (MQ=255) tctGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGc < 1:1981149/41‑1 (MQ=255) tGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtg < 1:2247292‑M1/69‑58 (MQ=255) tGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa < 1:2166778‑M1/51‑40 (MQ=255) tGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCg > 1:2998618/1‑40 (MQ=255) tGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGa > 1:4776869/1‑41 (MQ=255) gccagcaTAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg > 1:1382675‑M1/4‑10 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggca < 1:1109712‑M1/71‑62 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggca < 1:5076079‑M1/71‑62 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg < 1:2219365‑M1/69‑60 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg < 1:2986916‑M1/69‑60 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg > 1:3864189‑M1/1‑10 (MQ=255) gCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCaa < 1:244238/69‑1 (MQ=255) aGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcaggg < 1:2972579‑M1/71‑65 (MQ=255) cATAAtttaatatcagtaaaccggacataacccatgaagaaaaatggcgcttttttgaagtgggc > 1:1884356‑M1/1‑5 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggc < 1:2183298‑M1/70‑68 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaag > 1:2202898‑M1/1‑3 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttt < 1:102552‑M1/52‑50 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttt < 1:5163283‑M1/52‑50 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttt < 1:5110468‑M1/52‑50 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaag > 1:813057‑M1/1‑1 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaa < 1:3347764‑M1/40‑40 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaa < 1:886286‑M1/40‑40 (MQ=255) aaTACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGaaa < 1:4775844/71‑1 (MQ=255) aaTACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGaa > 1:1477941/1‑70 (MQ=255) | GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > W3110S.gb/236729‑236868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |