New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	= 436833	100 (1.450)	62 (0.900)	37/104	NT	40.4%	coding (546/546 nt)	seqA	regulatory protein for replication initiation
	?	minE	1803907 =	83 (1.200)					intergenic (+63/‑28)	ygaH/mprA	predicted inner membrane protein/DNA‑binding transcriptional regulator

ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/436765‑436833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA  >  minE/1803907‑1803971                                                                                                                                        ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAC                                                                  <  1:1384256/70‑1   CGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGC                                                               >  1:631197/1‑71   CGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGC                                                               >  1:2938422/1‑71      ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTG                                                             >  1:3122901/1‑70       CACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                            <  1:2280049/70‑1         CATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                         <  1:1560985/71‑1            CATGCAGTCGATGCAATTCCCGGCTGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                      >  1:2161441/1‑71             ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                     >  1:1128559/1‑71             ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                     >  1:41784/1‑71             ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                     >  1:4077512/1‑71             ATGCAGTAGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                     >  1:1320053/1‑71                CAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAG                                                  >  1:2841274/1‑71                 AGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                        <  1:2442606/64‑1                  GTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                <  1:3715021/71‑1                   TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                    <  1:2879337/66‑1                    CGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                              >  1:2636274/1‑71                     GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                              >  1:3992530/1‑70                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATA                                            >  1:3696924/1‑67                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                              <  1:483697/65‑1                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                        <  1:1235402/55‑1                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                        <  1:2357064/55‑1                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                        <  1:3369203/55‑1                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCAT                                             >  1:444051/1‑64                             TCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAAT                                     >  1:3672556/1‑71                              CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                    >  1:3253215/1‑71                              CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                    >  1:1136011/1‑71                              CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                    >  1:255917/1‑71                              CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                         <  1:1854034/50‑1                               CCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAA                                       <  1:1724490/67‑1                               CCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                        <  1:115409/50‑1                                 GGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGAT                                 <  1:326704/71‑1                                 GGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                      >  1:3694871/1‑50                                   CGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAG                               >  1:2015282/1‑71                                    GGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGT                              <  1:3950244/71‑1                                      AATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTC                            <  1:3557233/71‑1                                      AATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTC                            >  1:1111582/1‑71                                       ATTGATTGGGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                           >  1:3323668/1‑71                                       ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                           >  1:287651/1‑71                                       ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                           <  1:3327781/71‑1                                       ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                           >  1:2953136/1‑71                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                          <  1:346099/71‑1                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                          <  1:2308587/71‑1                                           ATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTT                        <  1:2493163/70‑1                                           ATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTT                        <  1:2157121/70‑1                                               AGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCC                   <  1:3784747/71‑1                                                GAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCC                  <  1:1793624/71‑1                                                 AAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCA                 >  1:1308454/1‑71                                                 AAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCA                 >  1:2797909/1‑71                                                     TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGC                    <  1:2592371/64‑1                                                     TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                          <  1:2954051/58‑1                                                     TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                          <  1:566338/58‑1                                                         CGGAACTATCTAACGTCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                          <  1:2200436/54‑1                                                          GGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAA        <  1:640217/71‑1                                                            AACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATG      >  1:3880396/1‑71                                                              CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCC                  >  1:1075302/1‑57                                                               TATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCT    >  1:4060083/1‑70                                                               TATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                    <  1:2455525/38‑1                                                               TATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                    <  1:3213550/38‑1                                                                ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTA   >  1:1171683/1‑70                                                                ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGC     >  1:2463763/1‑68                                                                ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAAT       >  1:3635461/1‑66                                                                ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACG                     >  1:4020503/1‑52                                                                ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                       >  1:3702945/1‑50                                                                ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                       >  1:2866618/1‑50                                                                ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                          >  1:142893/1‑47                                                                 TCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA  >  1:793210/1‑70                                                                     ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAG                               >  1:1921372/1‑37                                                                     ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAG                               >  1:64932/1‑37                                                                                                                                        ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/436765‑436833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA  >  minE/1803907‑1803971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.