mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 204,511 | C→T | 100% | intergenic (+111/‑73) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 204,556 | A→G | 100% | intergenic (+156/‑28) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 216,231 | A→T | 5.1% | I25F (ATT→TTT) | yafT → | predicted aminopeptidase |
| RA | 1,036,505 | G→A | 100% | A632A (GCG→GCA) | rsxC → | fused predicted 4Fe‑4S ferredoxin‑type protein |
| RA | 1,763,556 | T→C | 46.4% | noncoding (288/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,763,636 | A→G | 17.1% | noncoding (208/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,892,019:1 | +GC | 100% | intergenic (‑437/+54) | gudP ← / ← ygdL | predicted D‑glucarate transporter/conserved hypothetical protein |
| RA | 2,359,867 | G→A | 46.1% | noncoding (1228/2905 nt) | rrlA ← | 23S ribosomal RNA |
| RA | 2,359,876 | C→T | 42.4% | noncoding (1219/2905 nt) | rrlA ← | 23S ribosomal RNA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | minE | 444393 | 444425 | 33 | 13 [12] | [12] 13 | kdpE | DNA‑binding response regulator in two‑component regulatory system with KdpD |
| * | * | ÷ | minE | 899424 | 899451 | 28 | 13 [12] | [10] 15 | pspD | peripheral inner membrane phage‑shock protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 204740 | NA (NA) | 5 (0.120) | 4/84 | NT | NA | noncoding (157/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | = 204751 | NA (NA) | noncoding (168/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | minE | 882465 = | 53 (1.090) | 3 (0.070) | 3/94 | NT | 5.4% | intergenic (‑183/+86) | osmB/yciT | lipoprotein/predicted DNA‑binding transcriptional regulator |
| ? | minE | 882489 = | 56 (1.230) | intergenic (‑207/+62) | osmB/yciT | lipoprotein/predicted DNA‑binding transcriptional regulator | |||||
| * | ? | minE | 1611749 = | 7 (0.140) | 18 (0.430) +ATGCGGT |
12/86 | NT | 46.2% | coding (1404/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase |
| ? | minE | = 2603083 | 42 (0.870) | coding (684/753 nt) | yhiQ | predicted SAM‑dependent methyltransferase | |||||
| * | ? | minE | = 2905951 | 57 (1.180) | 4 (0.090) | 3/92 | NT | 6.9% | coding (143/1656 nt) | treC | trehalose‑6‑P hydrolase |
| ? | minE | = 2905964 | 56 (1.260) | coding (130/1656 nt) | treC | trehalose‑6‑P hydrolase | |||||