| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1379352 | 78 (0.960) | 11 (0.160) | 5/84 | NT | 13.9% | coding (807/1056 nt) | ycjS | predicted oxidoreductase, NADH‑binding |
| ? | AP009048 | = 1379361 | 69 (0.990) | coding (816/1056 nt) | ycjS | predicted oxidoreductase, NADH‑binding | |||||
TAACGGCGGCATTCTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1379277‑1379352‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctttATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGAGTGCAAATGACGTTTCCAGCCA < AP009048/1379361‑1379293 TAACGGCGGCATTCTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCA < 1:189746/71‑1 ACGGCGGCATTCTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGC < 1:5261115/71‑1 CGGCGGCATTCTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCT > 1:4591697/1‑71 GGCGGCATTCTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTT > 1:655899/1‑71 CGGCATTCTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCA > 1:6172476/1‑65 CGGCATTCTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCA > 1:6585128/1‑65 GAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTATCACCACAAAAGCTGA > 1:2541803/1‑71 GAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTATCACCACAAAAGCTGA > 1:3477278/1‑71 GAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTATCACCACAAAAGCTGA > 1:946528/1‑71 AAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCA > 1:3562074/1‑48 CGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTC > 1:1900938/1‑44 TCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTT < 1:531613/47‑1 TCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTT < 1:1138016/47‑1 CATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTT < 1:2065485/46‑1 TTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTATCACCACAAA < 1:2502172/56‑1 TTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTATCACCACAAA < 1:6100517/56‑1 TGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTATCACCACAAAAG > 1:549455/1‑56 TCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTATCACCACAAAAGC < 1:744907/52‑1 AACATCCGCGAACAGTCGATTATGAACGTCAGCTTTATCACCACAAAAGC > 1:447784/1‑50 AACATCCGCGAACAGTCGATTATGAACGTCAGCTTTATCACCACAAAAGC > 1:920926/1‑50 AACATCCGCGAACAGTCGATTATGAACGTCAGCTTTATCACCACAAAAGC > 1:3780665/1‑50 AACATCCGCGAACAGTCGATTATGAACGTCAGCTTTATCACCACAAAAGC > 1:1322345/1‑50 CAGCTTTATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGAGTGCAAATGACGTTTC > 1:6489516/1‑70 CAGCTTTATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGAGTGCAAATGACGTTTC < 1:6695413/70‑1 CAGCTTTATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGC > 1:4135884/1‑45 CAGCTTTATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGC > 1:2354050/1‑45 CAGCTTTATCACCACAAAAGCTGACGGTCATAATCGCCTGTTCG > 1:4728234/1‑44 AGCTTTATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGAGTGCAAATGACGTTTC > 1:2491104/1‑69 GCTTTATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGAGTGC > 1:3174744/1‑56 CTTTATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGAGTGCAAATGACGTTTCCAGC > 1:6006833/1‑71 TTTATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGAT > 1:1149318/1‑45 TTATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGA > 1:286227/1‑49 TTATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGA > 1:617936/1‑49 TATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGAGTGCAAATGACGTTTCCAGCCA > 1:3480340/1‑70 TATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGAGTGCAAATGACGTTTCCAGCCA > 1:7687953/1‑70 TATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGAGTGCAAATGACGTT < 1:243710/62‑1 TAACGGCGGCATTCTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1379277‑1379352‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctttATCACCACAAAAGCTGACGTTCATAATCGACTGTTCGCGGATGTTGAGTGCAAATGACGTTTCCAGCCA < AP009048/1379361‑1379293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |