| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1379352 | 78 (0.960) | 11 (0.160) | 5/84 | NT | 13.9% | coding (807/1056 nt) | ycjS | predicted oxidoreductase, NADH‑binding |
| ? | AP009048 | = 1379361 | 69 (0.990) | coding (816/1056 nt) | ycjS | predicted oxidoreductase, NADH‑binding | |||||
Only 100 of 147 total aligned reads displayed.
CATTCTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACGGTGAATTAATGA > AP009048/1379286‑1379422 | cATTCTGTGGATGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTtgtg < 1:7242438/71‑1 (MQ=255) ttCTGTTGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTtgtg < 1:7349927/69‑1 (MQ=255) cTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCtttt > 1:5023161/1‑64 (MQ=255) cTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTtgtg > 1:4008331/1‑67 (MQ=255) cTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTtgtg > 1:1202241/1‑67 (MQ=255) cTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTtgtg > 1:532234/1‑67 (MQ=255) cTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGA‑TATGAACGTCAGCTTTtgtg > 1:1665341/1‑66 (MQ=255) tgGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGa < 1:1071300/68‑1 (MQ=255) gAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTatcaccacaaaagctga > 1:946528‑M1/1‑54 (MQ=255) gAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTatcaccacaaaagctga > 1:2541803‑M1/1‑54 (MQ=255) gAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTgtgg < 1:460385/59‑1 (MQ=255) gAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTgtgg < 1:230369/59‑1 (MQ=255) gAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTgtgg < 1:7870085/59‑1 (MQ=255) gAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATaaagctg > 1:6489516‑M2/1‑63 (MQ=255) gAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATaaagctg < 1:6695413‑M2/70‑8 (MQ=255) gAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATaaagct > 1:2491104‑M2/1‑63 (MQ=255) gAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTgg > 1:4710982/1‑71 (MQ=255) aaCGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATa < 1:243710‑M2/62‑2 (MQ=255) aaCGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTg > 1:652457/1‑71 (MQ=255) cGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCg < 1:4206909/71‑1 (MQ=255) aTTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGAt > 1:2115123/1‑55 (MQ=255) aTTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGc > 1:4518874/1‑71 (MQ=255) tttGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTatcaccacaaa < 1:2502172‑M1/56‑12 (MQ=255) tttGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTatcaccacaaa < 1:6100517‑M1/56‑12 (MQ=255) ttGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTg > 1:7082039/1‑71 (MQ=255) ttGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTg > 1:5740259/1‑71 (MQ=255) ttGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTg > 1:3389831/1‑71 (MQ=255) tGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTatcaccacaaaag > 1:549455‑M1/1‑43 (MQ=255) tGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTg < 1:350603/70‑1 (MQ=255) gCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATaaagc > 1:3174744‑M2/1‑51 (MQ=255) aCTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTtg < 1:3768460/42‑1 (MQ=255) aCTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTc < 1:7625797/71‑1 (MQ=255) aCTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTc < 1:7020877/71‑1 (MQ=255) aCTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTc < 1:5947495/71‑1 (MQ=255) cTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTcc < 1:6943344/71‑1 (MQ=255) tCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTatcaccacaaaagc < 1:744907‑M1/52‑15 (MQ=255) tCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATaa > 1:286227‑M2/1‑47 (MQ=255) tCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTc > 1:830177/1‑69 (MQ=255) cAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAg > 1:2798786/1‑71 (MQ=255) aaCATCCGCGAACAGTCGATTATGAACGTCAGCTTTtg > 1:2105785/1‑38 (MQ=255) aaCATCCGCGAACAGTCGATTATGAACGTCAGCTTTatcaccacaaaagc > 1:3780665‑M1/1‑36 (MQ=255) aaCATCCGCGAACAGTCGATTATGAACGTCAGCTTTatcaccacaaaagc > 1:447784‑M1/1‑36 (MQ=255) aaCATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGa > 1:6534923/1‑44 (MQ=255) aaCATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGAt > 1:7816834/1‑45 (MQ=255) aaCATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGAt > 1:7735637/1‑45 (MQ=255) aTCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGa < 1:7846907/41‑1 (MQ=255) aTCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATaaa > 1:1149318‑M2/1‑42 (MQ=255) tCCGCGAACAGTCGGTTATGAACGTCAGCTTTTGTGGTGAt < 1:4510750/41‑1 (MQ=255) tCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGAt < 1:849967/41‑1 (MQ=255) tCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACat < 1:3929804/71‑1 (MQ=255) gcgAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATaaagctg > 1:4135884‑M2/1‑38 (MQ=255) gAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCt > 1:7684512/1‑70 (MQ=255) gAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTa > 1:433520/1‑71 (MQ=255) aaCAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTa > 1:2382044/1‑70 (MQ=255) aCAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTtca > 1:2979741/1‑71 (MQ=255) gTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCg < 1:2399667/71‑1 (MQ=255) tCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTcc > 1:1240039/1‑53 (MQ=255) tCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCa > 1:6264071/1‑54 (MQ=255) aTTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCt > 1:4900085/1‑44 (MQ=255) aTTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCt > 1:7488747/1‑44 (MQ=255) ttATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTaca > 1:5328093/1‑63 (MQ=255) ttATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTaca > 1:3109321/1‑63 (MQ=255) ttATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATaac < 1:22248/71‑1 (MQ=255) aTGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTTCAGCACATATCTacac > 1:148854/1‑62 (MQ=255) aTGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTacac > 1:1901568/1‑62 (MQ=255) tGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGcac < 1:2336732/51‑1 (MQ=255) tGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCg < 1:2706775/63‑1 (MQ=255) gAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTcc < 1:3027502/45‑1 (MQ=255) gAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTac < 1:7230228/58‑1 (MQ=255) aCGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACgg > 1:7702682/1‑70 (MQ=255) aCGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACgg > 1:3394702/1‑70 (MQ=255) aCGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACGGt > 1:7856060/1‑71 (MQ=255) aCGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACGGt < 1:5484237/71‑1 (MQ=255) cGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACGGTg < 1:2162430/71‑1 (MQ=255) cGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACGGTg < 1:4757669/71‑1 (MQ=255) gTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTc < 1:5590323/40‑1 (MQ=255) gTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACGGTg > 1:6982348/1‑70 (MQ=255) tCAGCTTTTGTGGTGATaaagctgacgttcataatcgactgttcgcggatgttgagtgcaaatgacgtttc > 1:3477278‑M2/1‑17 (MQ=255) tCAGCTTTTGTGGTGATaaagctgacgttcataatcgactgttcgcggatgttgagtgcaaatgacgtttc > 1:2541803‑M2/1‑17 (MQ=255) tCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACg < 1:6257081/66‑1 (MQ=255) cAGCTTTatcaccacaaaagctgacgttcataatcgactgttcgcggatgttgagtgcaaatgacgtttc < 1:6695413‑M1/70‑64 (MQ=255) cAGCTTTatcaccacaaaagctgacgttcataatcgactgttcgcggatgttgagtgcaaatgacgtttc > 1:6489516‑M1/1‑7 (MQ=255) cAGCTTTatcaccacaaaagctgacgttcataatcgactgttcgc > 1:2354050‑M1/1‑7 (MQ=255) cAGCTTTatcaccacaaaagctgacggtcataatcgcctgttcg > 1:4728234‑M1/1‑7 (MQ=255) gCTTTatcaccacaaaagctgacgttcataatcgactgttcgcggatgttgagtgc > 1:3174744‑M1/1‑5 (MQ=255) gCTTTTGTGGTGATaaagctgacgttcataatcgactgttcgcggatgttga < 1:744907‑M2/52‑39 (MQ=255) gCTTTTGTGGTGATaaagctgacgttcataatcgactgttcgcggatgtt > 1:920926‑M2/1‑14 (MQ=255) gCTTTTGTGGTGATaaagctgacgttcataatcgactgttcgcggatgtt > 1:1322345‑M2/1‑14 (MQ=255) gCTTTTGTGGTGATaaagctgacgttcataatcgactgttcgcggatgtt > 1:3780665‑M2/1‑14 (MQ=255) gCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACGGTGAATTa < 1:4869161/71‑1 (MQ=255) cTTTatcaccacaaaagctgacgttcataatcgactgttcgcggatgttgagtgcaaatgacgtttccagc > 1:6006833‑M1/1‑4 (MQ=255) tttatcaccacaaaagctgacgttcataatcgactgttcgcggat > 1:1149318‑M1/1‑3 (MQ=255) tttGTGGTGATaaagctgacgttcataatcgactgttcgcggatgttgagtgcaaa < 1:6100517‑M2/56‑46 (MQ=255) ttatcaccacaaaagctgacgttcataatcgactgttcgcggatgttga > 1:617936‑M1/1‑2 (MQ=255) ttatcaccacaaaagctgacgttcataatcgactgttcgcggatgttga > 1:286227‑M1/1‑2 (MQ=255) ttGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTa > 1:1771093/1‑45 (MQ=255) ttGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACGGTGAATTAATGa > 1:1849821/1‑71 (MQ=255) tatcaccacaaaagctgacgttcataatcgactgttcgcggatgttgagtgcaaatgacgtttccagcca > 1:7687953‑M1/1‑1 (MQ=255) tatcaccacaaaagctgacgttcataatcgactgttcgcggatgttgagtgcaaatgacgtttccagcca > 1:3480340‑M1/1‑1 (MQ=255) tatcaccacaaaagctgacgttcataatcgactgttcgcggatgttgagtgcaaatgacgtt < 1:243710‑M1/62‑62 (MQ=255) | CATTCTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGTCAGCTTTTGTGGTGATAAAGCTGGTGCGACGCTGTTTCCAGCACATATCTACACCGATAACAACGGTGAATTAATGA > AP009048/1379286‑1379422 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |