| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1908905 = | 93 (1.140) | 10 (0.140) | 5/88 | NT | 10.7% | intergenic (‑131/+35) | rrmA/cspC | 23S rRNA m1G745 methyltransferase/stress protein, member of the CspA‑family |
| ? | AP009048 | 1908925 = | 83 (1.140) | intergenic (‑151/+15) | rrmA/cspC | 23S rRNA m1G745 methyltransferase/stress protein, member of the CspA‑family | |||||
CCAGAAAGGTCCGGCAGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1908979‑1908905‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcaGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATT > AP009048/1908925‑1908991 CCAGAAAGGTCCGGCAGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGC < 1:1966558/71‑1 AGAAAGGTCCGGCAGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTT < 1:1951659/71‑1 AGAAAGGTCCGGCAGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTT > 1:2552350/1‑71 GAAAGGTCCGGCAGCTGTTAACGTAAGAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTT > 1:7516139/1‑70 GAAAGGTCCGGCAGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTT > 1:1199503/1‑70 AAAGGTCCGGCAGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTTC > 1:1985709/1‑70 AAAGGTCCGGCAGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTTC > 1:7037332/1‑70 AAAGGTCCGGCAGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTTC > 1:7613873/1‑70 AAGGTCCGGCAGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGC > 1:2929237/1‑66 GCAGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGC < 1:2378425/58‑1 AGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTTC < 1:2334508/59‑1 AGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTTC < 1:1170106/59‑1 TTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTTCA < 1:7445767/55‑1 TGATCGAATCCACTGATCTGAAGTGTGAATACGCT > 1:3866929/1‑35 TGATCGAATCCACTGATCTGAAGTGTGAATACGCT > 1:6245952/1‑35 TGAAGTGTGAATACGCTTCAGATCAGTGGATTCGATCAGATAGCTGTTACG < 1:2414810/51‑1 TGAAGTGTGAATACGCTTCAGATCAGTGGATTCGATCAGATAGCTGTTACG < 1:6708356/51‑1 TGAAGTGTGAATACGCTTCAGATCAGTGGATTCGATCAGATAGCTGTTAC < 1:6679513/50‑1 TGAAGTGTGAATACGCTTCAGATCAGTGGATTCGATCAGATAGCTGTTAC < 1:667632/50‑1 AAGTGTGAATACGCTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTT > 1:880624/1‑51 AAGTGTGAATACGCTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGT > 1:339475/1‑50 GTGTGAATACGCTTCAGATCAGTGGATTCGATCAGA > 1:2854280/1‑36 GTGAATACGCTTCAGATCAGTGGATTGGATCAGATAGCTGTTACG < 1:2049447/45‑1 GTGAATACGCTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCC > 1:919451/1‑71 GTGAATACGCTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCC > 1:6954996/1‑71 CTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAAT < 1:4622284/71‑1 CTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAAT < 1:7360125/71‑1 CTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAAT < 1:4230498/71‑1 TTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCT < 1:7788183/57‑1 TTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGG < 1:7096736/49‑1 TTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGG < 1:7106098/49‑1 TCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTG < 1:6358616/44‑1 TCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTG < 1:5067101/44‑1 TCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTG < 1:4602188/44‑1 TCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTG < 1:353556/44‑1 TCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTG < 1:2028265/44‑1 CAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATT < 1:4079275/69‑1 CAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATT < 1:7708990/69‑1 CAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTG > 1:5548696/1‑43 CAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTG > 1:3340556/1‑43 CCAGAAAGGTCCGGCAGCTGTTAACGTAACAGCTATCTGATCGAATCCACTGATCTGAAGTGTGAATACGCTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1908979‑1908905‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcaGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATT > AP009048/1908925‑1908991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |