| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1908905 = | 93 (1.140) | 10 (0.140) | 5/88 | NT | 10.7% | intergenic (‑131/+35) | rrmA/cspC | 23S rRNA m1G745 methyltransferase/stress protein, member of the CspA‑family |
| ? | AP009048 | 1908925 = | 83 (1.140) | intergenic (‑151/+15) | rrmA/cspC | 23S rRNA m1G745 methyltransferase/stress protein, member of the CspA‑family | |||||
Only 100 of 141 total aligned reads displayed.
ATCCGAACGCCAGGAGCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTT > AP009048/1908835‑1908974 | atCCGAACGCCAGGAGCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGAtt > 1:670648/1‑71 (MQ=255) tCCGAACGCCAGGAGCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGAtt < 1:1613941/70‑1 (MQ=255) tCCGAACGCCAGGAGCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTg < 1:7082937/71‑1 (MQ=255) tCCGAACGCCAGGAGCGAAGATAAAGCATAGTAAAAAGCCTCGCAATCGACGAGGCTTTATAGCGAGATTg < 1:1646495/71‑1 (MQ=255) cGAACGCCAGGAGCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTg > 1:1156269/1‑69 (MQ=255) cGAACGCCAGGAGCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGa < 1:7333488/70‑1 (MQ=255) aattcaggacggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatcTg < 1:4079275‑M1/2‑1 (MQ=255) aattcaggacggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatcTg < 1:7708990‑M1/2‑1 (MQ=255) attcaggacggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatcTGAAg < 1:4622284‑M1/5‑1 (MQ=255) attcaggacggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatcTGAAg < 1:7360125‑M1/5‑1 (MQ=255) catgAGCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTAtt < 1:3240638/68‑1 (MQ=255) ggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatcTGAAGCGTATTcac > 1:6954996‑M1/58‑71 (MQ=255) ggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatcTGAAGCGTATTcac > 1:919451‑M1/58‑71 (MQ=255) gAGCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTcac < 1:1109166/71‑1 (MQ=255) gAGCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTca > 1:6376553/1‑70 (MQ=255) gCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTa > 1:111902/1‑64 (MQ=255) gCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCacac < 1:114616/71‑1 (MQ=255) gCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCacac > 1:4954591/1‑71 (MQ=255) cGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTca > 1:6078093/1‑67 (MQ=255) gAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACtg > 1:5858437/1‑70 (MQ=255) agaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatcTGaa < 1:7788183‑M1/4‑1 (MQ=255) aaGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACtt > 1:2109486/1‑70 (MQ=255) aaGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACtt > 1:3161760/1‑70 (MQ=255) aaGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACtt > 1:7153355/1‑70 (MQ=255) aGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACtt > 1:4726724/1‑69 (MQ=255) gATAAAGCATATTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAg < 1:1497040/71‑1 (MQ=255) gATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAg < 1:3821832/71‑1 (MQ=255) gATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAg < 1:7874159/71‑1 (MQ=255) tAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACtt > 1:2534077/1‑66 (MQ=255) aaaGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGa > 1:1624767/1‑69 (MQ=255) aaaGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGAt > 1:5276805/1‑70 (MQ=255) aaaGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGAt > 1:416136/1‑70 (MQ=255) aaGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCa < 1:1024721/71‑1 (MQ=255) ccggcagctgttaacgtaacagctatctgatcgaatccactgatcTGaa < 1:7096736‑M1/4‑1 (MQ=255) aGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAg > 1:5901254/1‑71 (MQ=255) aGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAg > 1:6616895/1‑71 (MQ=255) cATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTg < 1:7901224/71‑1 (MQ=255) cagctgttaacgtaacagctatctgatcgaatccactgatcTg > 1:5548696‑M1/42‑43 (MQ=255) cagctgttaacgtaacagctatctgatcgaatccactgatcTGa < 1:6358616‑M1/3‑1 (MQ=255) cagctgttaacgtaacagctatctgatcgaatccactgatcTGa < 1:353556‑M1/3‑1 (MQ=255) cagctgttaacgtaacagctatctgatcgaatccactgatcTGa < 1:5067101‑M1/3‑1 (MQ=255) cagctgttaacgtaacagctatctgatcgaatccactgatcTGa < 1:4602188‑M1/3‑1 (MQ=255) aGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTg < 1:1441143/42‑1 (MQ=255) tAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGAtt < 1:1767860/39‑1 (MQ=255) aaaaGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCg < 1:960301/70‑1 (MQ=255) aaaaGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGa > 1:7727635/1‑71 (MQ=255) aGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCa < 1:1055344/71‑1 (MQ=255) aGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCa < 1:5331139/71‑1 (MQ=255) acgtaacagctatctgatcgaatccactgatcTGAAGCGTATTCACACtt > 1:339475‑M1/33‑50 (MQ=255) cgtaacagctatctgatcgaatccactgatcTGAAGCGTATTCACACTTCa < 1:2414810‑M1/20‑1 (MQ=255) cgtaacagctatctgatccaatccactgatcTGAAGCGTATTcac < 1:2049447‑M1/14‑1 (MQ=255) gtaacagctatctgatcgaatccactgatcTGAAGCGTATTCACACTTCa < 1:6679513‑M1/20‑1 (MQ=255) tCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTca > 1:5794109/1‑42 (MQ=255) tCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAg > 1:2288107/1‑55 (MQ=255) cGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAg > 1:4788900/1‑71 (MQ=255) cGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAg > 1:416501/1‑71 (MQ=255) gCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGc < 1:2946791/71‑1 (MQ=255) ttCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGt < 1:1063779/71‑1 (MQ=255) tCGACGAGGCTTTATAGCGAGATTGAAGCGTATTcac < 1:1266884/37‑1 (MQ=255) tCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATc < 1:3948025/60‑1 (MQ=255) tCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATc < 1:2155452/60‑1 (MQ=255) tCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATc < 1:1196883/60‑1 (MQ=255) tCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATc < 1:558201/60‑1 (MQ=255) tCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATa > 1:383658/1‑65 (MQ=255) cgacgaGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGAt < 1:4723987/45‑1 (MQ=255) cgacgaGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGAt < 1:1410108/45‑1 (MQ=255) cgacgaGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGtt < 1:1959143/70‑1 (MQ=255) cgacgaGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTa > 1:5737172/1‑71 (MQ=255) cgacgaGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTa > 1:2962220/1‑71 (MQ=255) acgaGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAg > 1:7298515/1‑46 (MQ=255) acgaGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAg > 1:5079432/1‑46 (MQ=255) acgaGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACg > 1:519319/1‑71 (MQ=255) gaGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGt > 1:6462736/1‑70 (MQ=255) aGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATc < 1:7242580/41‑1 (MQ=255) aGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATc < 1:6811717/41‑1 (MQ=255) aGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATc < 1:4448120/41‑1 (MQ=255) tttATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCa < 1:1947370/51‑1 (MQ=255) tttATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCa < 1:4553728/51‑1 (MQ=255) tttATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCa < 1:4948683/51‑1 (MQ=255) tttATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAg > 1:5171097/1‑71 (MQ=255) ttATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCa < 1:5409777/50‑1 (MQ=255) ttATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGc > 1:3222438/1‑71 (MQ=255) tataGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGa > 1:310263/1‑51 (MQ=255) taGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGt > 1:7077359/1‑56 (MQ=255) taGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGt > 1:5823724/1‑56 (MQ=255) gCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCg < 1:7421573/41‑1 (MQ=255) gCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGAt < 1:4462964/48‑1 (MQ=255) gCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTg < 1:5440465/68‑1 (MQ=255) cGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGCTCAGATAGCTGTTACGTTAACAGCTGCCgg < 1:664568/71‑1 (MQ=255) gagaTTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAg < 1:4040156/63‑1 (MQ=255) agaTTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGa > 1:1146594/1‑70 (MQ=255) gaTTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGc > 1:2921886/1‑62 (MQ=255) gaTTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGc > 1:2596412/1‑62 (MQ=255) aTTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCt > 1:637287/1‑71 (MQ=255) aTTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCt > 1:5224218/1‑71 (MQ=255) aTTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCt > 1:6406042/1‑71 (MQ=255) aTTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCt > 1:1225135/1‑71 (MQ=255) ttGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCtt < 1:2911257/71‑1 (MQ=255) ttGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCtt < 1:6550244/71‑1 (MQ=255) TGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTaa < 1:7445767‑M1/55‑1 (MQ=255) | ATCCGAACGCCAGGAGCGAAGATAAAGCATAGTAAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTT > AP009048/1908835‑1908974 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |