| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2825421 = | 78 (0.960) | 4 (0.050) | 4/92 | NT | 5.1% | coding (374/960 nt) | srlE | glucitol/sorbitol‑specific enzyme IIB component of PTS |
| ? | AP009048 | 2825445 = | 75 (0.980) | coding (398/960 nt) | srlE | glucitol/sorbitol‑specific enzyme IIB component of PTS | |||||
GCCAGTAAACCATCGCTTTGTTCGGTGATTTTCTTACTGGTGTCATAGTCACGGCCCACGGAAGAGGGTTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2825493‑2825421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGCATGG > AP009048/2825445‑2825513 GCCAGTAAACCATCGCTTTGTTCGGTGATTTTCTTACTGGTGTCATAGTCACGGCCCACGGAAGAGGGTTG > 1:1906783/1‑71GCCAGTAAACCATCGCTTTGTTCGGTGATTTTCTTACTGGTGTCATAGTCACGGCCCACGGAAGAGGGTTG < 1:1921626/71‑1 CAGTAAACCATCGCTTTGTTCGGTGATTTTCTTACTGGTGTCATAGTCACGGCCCACGGAAGAGGGTTG < 1:3459504/69‑1 aTTGTTCGGTGATTTTCTTACTGGTGTCATAGTCACGGCCCACGGAAGAGGGTTGTG > 1:5724788/2‑57 TTTGTTCGGTGATTTTCTTACTGGTGTCATAGTCACGGCCCACGGAAGAGGGTTGTG > 1:1094628/1‑57 TTCTTACTGGTGTCATAGTCACGGCCCACGGAAGAGGGTTGTG < 1:6946184/43‑1 TTCTTACTGGTGTCATAGTCACGGCCCACGGAAGAGGGTTGTG < 1:312375/43‑1 AGTCACGGCCCACGGAAGAGGGTTGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGC > 1:3680967/1‑62 TCACGGCCCACGGAAGAGGGTTGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACT > 1:3713431/1‑71 CACGGCCCACGGAAGAGGGTTGTGACTATGACACCAGTAAGAAAATCACCGAACAAAG > 1:5544345/1‑58 CGGCCCACGGAAGAGGGTTGTGACTATGACACCAGTAAGAAAATC > 1:739281/1‑45 GTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGCATG > 1:1630828/1‑71 GTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAA > 1:4765642/1‑63 GTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTA > 1:5490380/1‑47 GTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTA > 1:5499748/1‑47 GTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTA > 1:5905077/1‑47 GTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGA > 1:3353861/1‑40 GTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGA > 1:3298422/1‑40 TGACTATGACACCAGTAAGAAAATCACCGAACGAAGCGATGGTTTACTGGCGA > 1:3852522/1‑53 TGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGCATtg < 1:2403867/71‑3 TGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGG < 1:3936055/42‑1 TGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGG < 1:5415459/42‑1 GACTATGACACCAGTAGGAAAATCACCGAACAAAGCGATGGTTTACT > 1:5554859/1‑47 GACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAAT < 1:6984273/62‑1 GACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAAT < 1:2176269/62‑1 GACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACT > 1:6309796/1‑47 GACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACT > 1:6318763/1‑47 GCCAGTAAACCATCGCTTTGTTCGGTGATTTTCTTACTGGTGTCATAGTCACGGCCCACGGAAGAGGGTTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2825493‑2825421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGCATGG > AP009048/2825445‑2825513 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |