| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2825421 = | 78 (0.960) | 4 (0.050) | 4/92 | NT | 5.1% | coding (374/960 nt) | srlE | glucitol/sorbitol‑specific enzyme IIB component of PTS |
| ? | AP009048 | 2825445 = | 75 (0.980) | coding (398/960 nt) | srlE | glucitol/sorbitol‑specific enzyme IIB component of PTS | |||||
Only 100 of 128 total aligned reads displayed.
CTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGCATGGGG > AP009048/2825376‑2825515 | ctGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGAc > 1:7874022/1‑71 (MQ=255) tGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGAc > 1:4450260/1‑70 (MQ=255) gCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTa < 1:6389790/70‑1 (MQ=255) tAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTAt < 1:3546417/68‑1 (MQ=255) aaaaGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGaca > 1:6327921/1‑71 (MQ=255) aaaGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGacac > 1:5751053/1‑71 (MQ=255) gctttgttcggtgattttcttactggtgtcatagtCACAACCCTCTTCCGTGGGCCGTGACt > 1:3680967‑M1/36‑62 (MQ=255) gaagaaAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAg < 1:3162160/71‑1 (MQ=255) aagaaAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAg > 1:6031587/1‑70 (MQ=255) aaaaCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACt < 1:764628/57‑1 (MQ=255) aaaaCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACt < 1:5520494/57‑1 (MQ=255) aaaCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAg > 1:6838625/1‑70 (MQ=255) aaCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACAcc > 1:3296286/1‑63 (MQ=255) aaCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAg < 1:5019948/65‑1 (MQ=255) aCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGa > 1:1129088/1‑58 (MQ=255) tCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATc < 1:3183169/71‑1 (MQ=255) tCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATc < 1:3671495/71‑1 (MQ=255) aCTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCAc > 1:1120716/1‑71 (MQ=255) aCTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCACTAAGAAAATCAc > 1:6658539/1‑71 (MQ=255) cTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCAc > 1:2308185/1‑70 (MQ=255) gtagtaGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTAt > 1:2786646/1‑48 (MQ=255) tagtagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGaa < 1:3170018/71‑1 (MQ=255) tagtagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGaa > 1:2022523/1‑71 (MQ=255) tagtagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGaa > 1:4359598/1‑71 (MQ=255) gtagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACa < 1:842617/71‑1 (MQ=255) gtagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACa < 1:4137878/71‑1 (MQ=255) tagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGa > 1:7438987/1‑40 (MQ=255) agGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACa > 1:921761/1‑69 (MQ=255) ggTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAg < 1:5751899/71‑1 (MQ=255) gATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTAt < 1:6597027/39‑1 (MQ=255) aTGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGa < 1:357715/70‑1 (MQ=255) aTGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGa < 1:2279100/70‑1 (MQ=255) aTGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGa < 1:4632397/70‑1 (MQ=255) aTGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGa < 1:1758908/70‑1 (MQ=255) tGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGacac > 1:756027/1‑42 (MQ=255) gCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATgg > 1:1694464/1‑71 (MQ=255) cGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATgg < 1:5336772/70‑1 (MQ=255) cGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATgg < 1:5956957/70‑1 (MQ=255) cGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATgg < 1:6282219/70‑1 (MQ=255) cGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATgg < 1:1283611/70‑1 (MQ=255) cGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGt > 1:6642349/1‑71 (MQ=255) gACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAg < 1:4777114/42‑1 (MQ=255) gACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAg < 1:4973328/42‑1 (MQ=255) gACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGtt < 1:4221013/71‑1 (MQ=255) gACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGtt < 1:3437360/71‑1 (MQ=255) acacCACAACCCTCTTCCGTGGGCCTTGACTATGACACCAGTAAGaaaa < 1:3880057/49‑1 (MQ=255) acacCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGaaaa < 1:3894554/49‑1 (MQ=255) acacCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGaaaa < 1:5534775/49‑1 (MQ=255) agtcacggcccacggaagagggttgtgACTATGACACCAGTAAGAAAATCACCGAACAAAGc > 1:3680967‑M2/28‑62 (MQ=255) accacAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTa > 1:3316266/1‑70 (MQ=255) tcacggcccacggaagagggttgtgACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACt > 1:3713431‑M2/26‑71 (MQ=255) ccacAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACt > 1:6437664/1‑71 (MQ=255) CACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGaa < 1:6946184‑M1/43‑1 (MQ=255) CACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAAcaat > 1:5724788‑M1/1‑56 (MQ=255) CACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACaaa > 1:1094628‑M1/1‑57 (MQ=255) cggcccacggaagagggttgtgACTATGACACCAGTAAGAAAATc > 1:739281‑M2/23‑45 (MQ=255) CAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTg < 1:3459504‑M1/69‑1 (MQ=255) CAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGc > 1:1906783‑M1/1‑71 (MQ=255) CAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGc < 1:1921626‑M1/71‑1 (MQ=255) aaCCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGc > 1:6058608/1‑70 (MQ=255) aCCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCg > 1:917416/1‑70 (MQ=255) aCCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCg > 1:6857237/1‑70 (MQ=255) ccTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAg < 1:6334767/71‑1 (MQ=255) ctctTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCa > 1:5310116/1‑41 (MQ=255) ctctTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCa > 1:3941873/1‑41 (MQ=255) tctTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGaa < 1:7320978/45‑1 (MQ=255) tctTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGaa < 1:4745507/45‑1 (MQ=255) tctTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGttt < 1:4912315/59‑1 (MQ=255) tctTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTa > 1:5889681/1‑60 (MQ=255) ctTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGtt < 1:6400206/57‑1 (MQ=255) ctTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGtt < 1:6810838/57‑1 (MQ=255) ttCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGaa > 1:5094449/1‑43 (MQ=255) ttCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTgg > 1:3837356/1‑71 (MQ=255) tCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACaaa < 1:7683713/46‑1 (MQ=255) tCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACa < 1:4624592/44‑1 (MQ=255) ccGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACt > 1:6091838/1‑58 (MQ=255) ccGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTgg < 1:6775207/69‑1 (MQ=255) gTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTAc < 1:3126253/55‑1 (MQ=255) gTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATCGTTTACTGGCGAAGCTGGGAAt < 1:1437996/71‑1 (MQ=255) tgcgCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATg < 1:3782976/68‑1 (MQ=255) tGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACt > 1:4016911/1‑55 (MQ=255) gCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGc < 1:3609307/71‑1 (MQ=255) ccGTTACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGtt < 1:6289558/47‑1 (MQ=255) ccGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGtt < 1:3119001/47‑1 (MQ=255) ccGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGt < 1:706104/60‑1 (MQ=255) ccGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGCa > 1:5994549/1‑71 (MQ=255) gtgACTATGACACCAGTAAGAAAATCACCGAACAAAGCGa > 1:3298422‑M2/4‑40 (MQ=255) gtgACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTa > 1:5499748‑M2/4‑47 (MQ=255) gtgACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTa > 1:5905077‑M2/4‑47 (MQ=255) gtgACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGaa > 1:4765642‑M2/4‑63 (MQ=255) gtgACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGCATg > 1:1630828‑M2/4‑71 (MQ=255) tgACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATgg < 1:5415459‑M2/40‑1 (MQ=255) tgACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATgg < 1:3936055‑M2/40‑1 (MQ=255) tgACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGcattg < 1:2403867‑M2/69‑3 (MQ=255) gACTATGACACCAGTAGGAAAATCACCGAACAAAGCGATGGTTTACt > 1:5554859‑M2/2‑47 (MQ=255) gACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACt > 1:6309796‑M2/2‑47 (MQ=255) gACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAAt < 1:6984273‑M2/61‑1 (MQ=255) gACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAAt < 1:2176269‑M2/61‑1 (MQ=255) aCTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGCATgggg > 1:2805654/1‑71 (MQ=255) aCTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGCATggg < 1:5436903/70‑1 (MQ=255) | CTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACTGGCGAAGGTGGGAATGGGCATGGGG > AP009048/2825376‑2825515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |