| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2825421 = | 78 (0.960) | 4 (0.050) | 4/92 | NT | 5.1% | coding (374/960 nt) | srlE | glucitol/sorbitol‑specific enzyme IIB component of PTS |
| ? | AP009048 | 2825445 = | 75 (0.980) | coding (398/960 nt) | srlE | glucitol/sorbitol‑specific enzyme IIB component of PTS | |||||
Only 100 of 119 total aligned reads displayed.
ACATTGTGGAAGATATTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACT > AP009048/2825352‑2825490 | caatgcccattcccaccttcgccagtaaaccatcgctttgttcggtgattttcttactggtgtcatagtca < 1:2403867‑M1/2‑1 (MQ=255) cATTGTGTAAGATATTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGAcacca > 1:760232/1‑70 (MQ=255) aTTGTGGAAGATATTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGAcaccac > 1:6326786/1‑70 (MQ=255) ttGTGGAAGATATTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACaa < 1:7145402/71‑1 (MQ=255) tgtgGAAGATATTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACaa < 1:5276198/70‑1 (MQ=255) tgtgGAAGATATTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAAc > 1:5613384/1‑71 (MQ=255) gAAGATATTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCctc < 1:1516348/71‑1 (MQ=255) attcccaccttcgccagtaaaccatcgctttgttcggtgattttcttactggtgtcatagtc < 1:6984273‑M1/1‑1 (MQ=255) attcccaccttcgccagtaaaccatcgctttgttcggtgattttcttactggtgtcatagtc < 1:2176269‑M1/1‑1 (MQ=255) ttcccaccttcgccagtaaaccatcgctttgttcggtgattttcttactggtgtcatagtcac > 1:4765642‑M1/61‑63 (MQ=255) aGATATTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCtt > 1:715008/1‑71 (MQ=255) gATATTTATGGCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTc > 1:7159922/1‑71 (MQ=255) atatTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTcc > 1:5737821/1‑71 (MQ=255) atatTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTcc > 1:1945846/1‑71 (MQ=255) atTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCg < 1:3385899/70‑1 (MQ=255) tttATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGGGACACCACAACCCTCTTCCGt < 1:3916354/70‑1 (MQ=255) tttATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGt < 1:7072068/70‑1 (MQ=255) tttATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTg < 1:1844871/71‑1 (MQ=255) tttATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTg < 1:3202735/71‑1 (MQ=255) aTGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTACGTGGGc > 1:3324903/1‑71 (MQ=255) tGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGcc < 1:2845118/71‑1 (MQ=255) ctctGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGt > 1:4550544/1‑70 (MQ=255) agtaaaccatcgctttgttcggtgattttcttactggtgtcatagtc > 1:6318763‑M1/47‑47 (MQ=255) agtaaaccatcgctttgttcggtgattttcttactggtgtcatagtc > 1:6309796‑M1/47‑47 (MQ=255) agtaaaccatcgctttgttcggtgattttcttactggtgtcatagtCACAACCCTCTTCCGTGGGCCGTGa > 1:3713431‑M1/47‑71 (MQ=255) ctGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGAc > 1:7874022/1‑71 (MQ=255) taaaccatcgctttgttcggtgattttcttactggtgtcatagtcac > 1:5905077‑M1/45‑47 (MQ=255) taaaccatcgctttgttcggtgattttcttactggtgtcatagtcac > 1:5499748‑M1/45‑47 (MQ=255) taaaccatcgctttgttcggtgattttcttactggtgtcatagtcac > 1:5490380‑M1/45‑47 (MQ=255) tGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGAc > 1:4450260/1‑70 (MQ=255) ccatcgctttgttcggtgattttcttactggtgtcatagtca < 1:3936055‑M1/2‑1 (MQ=255) ccatcgctttgttcggtgattttcttactggtgtcatagtca < 1:5415459‑M1/2‑1 (MQ=255) tAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTAt < 1:3546417/68‑1 (MQ=255) aaaaGAAGAAAACATCACTGTAGTAGGTGATGCGAcacc > 1:5278827/1‑39 (MQ=255) aaaaGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTcc < 1:3871939/52‑1 (MQ=255) aaaaGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTcc < 1:1118358/52‑1 (MQ=255) aaaaGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGaca > 1:6327921/1‑71 (MQ=255) aaaaGAAGAAAACATCACTGTAGTAGGGGATGCGACACCACAACCCTCTTcc < 1:1666044/52‑1 (MQ=255) tcgctttgttcggtgattttcttactggtgtcatagtcac > 1:3353861‑M1/38‑40 (MQ=255) aaaGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGacac > 1:5751053/1‑71 (MQ=255) aagaagAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGacac > 1:5795766/1‑70 (MQ=255) gctttgttcggtgattttcttactggtgtcatagtCACAACCCTCTTCCGTGGGCCGTGACt > 1:3680967‑M1/36‑62 (MQ=255) gaagaaAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAg < 1:3232060/71‑1 (MQ=255) ctttgttcggtgattttcttactggtgtcatagtCACAACCCTCTTCCGTGGGCCGTg > 1:5544345‑M1/35‑58 (MQ=255) agaaAACATCACTGTAGTAGGTGATGCGACACCACAACCctct > 1:5966337/1‑43 (MQ=255) gaaAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTcc < 1:473870/45‑1 (MQ=255) gaaAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTcc < 1:3308327/45‑1 (MQ=255) gaaAACATCACTGTAGTAGGTGATGCGACACCACAACCCACTTcc < 1:2531139/45‑1 (MQ=255) aaaaCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACt < 1:5520494/57‑1 (MQ=255) aaaCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCg > 1:2605628/1‑44 (MQ=255) aaaCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAg > 1:6838625/1‑70 (MQ=255) aaaCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAg > 1:3951110/1‑70 (MQ=255) aaCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACAcc > 1:3296286/1‑63 (MQ=255) aaCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAg < 1:5019948/65‑1 (MQ=255) aCATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGa > 1:1129088/1‑58 (MQ=255) aTCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGaaa > 1:5983388/1‑69 (MQ=255) tCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATc < 1:3183169/71‑1 (MQ=255) tCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATc < 1:3671495/71‑1 (MQ=255) gattttcttactggtgtcatagtCACAACCCTCTTCCGTGGGCCg > 1:739281‑M1/24‑45 (MQ=255) aCTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCAc > 1:1120716/1‑71 (MQ=255) aCTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCACTAAGAAAATCAc > 1:6658539/1‑71 (MQ=255) cTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTggcc > 1:5182524/1‑39 (MQ=255) cTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCAcc < 1:7258202/71‑1 (MQ=255) cTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCAc > 1:2308185/1‑70 (MQ=255) tGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGt < 1:92630/43‑1 (MQ=255) tGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGt < 1:4365297/43‑1 (MQ=255) gtagtaGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTAt > 1:932490/1‑48 (MQ=255) gtagtaGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTAt > 1:2786646/1‑48 (MQ=255) tagtagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGaa < 1:3170018/71‑1 (MQ=255) tagtagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGaa > 1:4359598/1‑71 (MQ=255) tagtagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGaa > 1:432247/1‑71 (MQ=255) tagtagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGaa > 1:2022523/1‑71 (MQ=255) gtagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACa < 1:842617/71‑1 (MQ=255) tagGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGa > 1:7438987/1‑40 (MQ=255) tagGTGATGCGACACCACAACCCTCTTACGTGGGCCGTGa > 1:6844415/1‑40 (MQ=255) agGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACa > 1:921761/1‑69 (MQ=255) ggTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAg < 1:5751899/71‑1 (MQ=255) gATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTAt < 1:6597027/39‑1 (MQ=255) aTGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGa < 1:4632397/70‑1 (MQ=255) aTGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGa < 1:1758908/70‑1 (MQ=255) aTGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGa < 1:2279100/70‑1 (MQ=255) aTGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGa < 1:357715/70‑1 (MQ=255) tGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGacac > 1:756027/1‑42 (MQ=255) gCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATgg > 1:1694464/1‑71 (MQ=255) cGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATgg < 1:5956957/70‑1 (MQ=255) cGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATgg < 1:1283611/70‑1 (MQ=255) cGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATgg < 1:6282219/70‑1 (MQ=255) cGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGt > 1:6642349/1‑71 (MQ=255) gACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAg < 1:4973328/42‑1 (MQ=255) gACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAg < 1:4777114/42‑1 (MQ=255) gACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGtt < 1:4221013/71‑1 (MQ=255) acacCACAACCCTCTTCCGTGGGCCTTGACTATGACACCAGTAAGaaaa < 1:3880057/49‑1 (MQ=255) acacCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGaaaa < 1:3894554/49‑1 (MQ=255) acacCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGaaaa < 1:5534775/49‑1 (MQ=255) accacAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTa > 1:3316266/1‑70 (MQ=255) ccacAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACt < 1:1893232/71‑1 (MQ=255) ccacAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACt > 1:6437664/1‑71 (MQ=255) CACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGaa < 1:312375‑M1/43‑1 (MQ=255) CACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAAcaat > 1:5724788‑M1/1‑56 (MQ=255) CACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACaaa > 1:1094628‑M1/1‑57 (MQ=255) | ACATTGTGGAAGATATTTATGTCTCTGGCGTAAAAGAAGAAAACATCACTGTAGTAGGTGATGCGACACCACAACCCTCTTCCGTGGGCCGTGACTATGACACCAGTAAGAAAATCACCGAACAAAGCGATGGTTTACT > AP009048/2825352‑2825490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |