| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3188046 | 117 (1.440) | 6 (0.090) | 3/84 | NT | 5.9% | coding (1991/2466 nt) | yqiG | predicted outer membrane usher protein |
| ? | AP009048 | = 3188089 | 91 (1.300) | coding (2034/2466 nt) | yqiG | predicted outer membrane usher protein | |||||
GTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3187971‑3188046‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtttATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATCATAAAACGCGAGTCAGCACTACCGCTATAG < AP009048/3188089‑3188020 GTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCG > 1:1811537/1‑71 TGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCG > 1:5268913/1‑71 GGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCG < 1:5558274/70‑1 GAATGGTTCATTCAGTGCGACGCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTT < 1:677913/71‑1 GAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTT > 1:910805/1‑71 AATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTT < 1:5963069/71‑1 GTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTATTGTTCAACGGAATATCTTCAGTGCCG > 1:707998/1‑71 GCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTATTGTTCAACGGAATATCTTCAGTGCCGTCTGC < 1:2739223/71‑1 GCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTATTGTTCAACGGAATATCTTCAGTGCCGTCTGC < 1:145014/71‑1 GCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTATTGTTCAACGGAATATCTTCAGTGCCGTCTGC < 1:6583351/71‑1 CTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTATTGTTCAACGGAATATCTTCAGTGCCGTCTGCG > 1:7805973/1‑71 CTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTATTGTTCAACGGAATATCTTCAGTGCCGTCTG > 1:3022559/1‑69 CGCGTTTATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATC > 1:3187194/1‑47 CGCGTTTATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATC > 1:2597918/1‑47 CGTTTATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATCATAAAACGCGAGTCAGCACTACCGCT < 1:3290596/71‑1 CGTTTATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATCATAAAACGCGAGTCAGCACTACCGC > 1:2685052/1‑70 CGTTTATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATCATAAAACGCGAGTCAGCACTACCGC > 1:6608669/1‑70 TTATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATCATAAAACGCGAGTCAGCACTACCGCTA > 1:2888454/1‑69 TATTGTTCAACGGAATATCTTCAGTGCCGTCTTCGTCGATCATAAAACGC < 1:901351/50‑1 TATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATCATAAAACGCGAGTCAGCACTACCGCTATAG > 1:4150599/1‑71 TATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATCATAAAACGCGAGTCAGCACTACCGCTATAG > 1:3067785/1‑71 TATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATCATAAAACGCGAGTCAGCACTACCGCTATAG > 1:1138015/1‑71 TATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATCATAAAA > 1:7792307/1‑47 TATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATCA < 1:808621/42‑1 TATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTC > 1:3231601/1‑37 TATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTC > 1:7502005/1‑37 GTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3187971‑3188046‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtttATTGTTCAACGGAATATCTTCAGTGCCGTCTGCGTCGATCATAAAACGCGAGTCAGCACTACCGCTATAG < AP009048/3188089‑3188020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |