| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3188046 | 117 (1.440) | 6 (0.090) | 3/84 | NT | 5.9% | coding (1991/2466 nt) | yqiG | predicted outer membrane usher protein |
| ? | AP009048 | = 3188089 | 91 (1.300) | coding (2034/2466 nt) | yqiG | predicted outer membrane usher protein | |||||
Only 100 of 174 total aligned reads displayed.
AATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGC > AP009048/3187976‑3188116 | aaTGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTT < 1:5963069‑M1/71‑1 (MQ=255) aTGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGtttt < 1:5939492/71‑1 (MQ=255) tGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTa < 1:3270192/71‑1 (MQ=255) gTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTAt < 1:3263965/70‑1 (MQ=255) ttcattcaCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGa < 1:2236489/71‑1 (MQ=255) gcattcaCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGa < 1:7539089/69‑1 (MQ=255) cattcaCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATc > 1:6336662/1‑71 (MQ=255) attcaCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTTCTGACTCGCGTTTTATGATCg < 1:5110964/71‑1 (MQ=255) attcaCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCg < 1:2539780/71‑1 (MQ=255) caCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACg > 1:850377/1‑71 (MQ=255) aCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACg > 1:5059852/1‑70 (MQ=255) aCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACg < 1:3450416/70‑1 (MQ=255) tGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGAc < 1:7824747/67‑1 (MQ=255) cGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACTCAGAc < 1:6769907/71‑1 (MQ=255) gACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCa < 1:4955756/67‑1 (MQ=255) gACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGAc < 1:2667841/70‑1 (MQ=255) aCTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACg > 1:723640/1‑70 (MQ=255) gCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACt > 1:281196/1‑71 (MQ=255) ccACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACg > 1:3843929/1‑59 (MQ=255) ccACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACg > 1:3096059/1‑59 (MQ=255) ccACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACg > 1:2868350/1‑59 (MQ=255) cACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTg < 1:5682522/70‑1 (MQ=255) cACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTg < 1:1616497/70‑1 (MQ=255) cGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAg < 1:902683/71‑1 (MQ=255) ggTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGAc < 1:317324/60‑1 (MQ=255) gTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGa > 1:1267520/1‑70 (MQ=255) tGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGa < 1:845301/47‑1 (MQ=255) gCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTAt > 1:7933751/1‑44 (MQ=255) gCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGatat > 1:625695/1‑71 (MQ=255) ccGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACgg > 1:1423455/1‑58 (MQ=255) ccGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACgg > 1:120824/1‑58 (MQ=255) cGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATg < 1:3978638/43‑1 (MQ=255) cGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCg < 1:3478750/47‑1 (MQ=255) gCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTattgttcaacggaatatcttcagtgccgtctgc < 1:6583351‑M1/71‑34 (MQ=255) gCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTattgttcaacggaatatcttcagtgccgtctgc < 1:145014‑M1/71‑34 (MQ=255) gCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTcc > 1:1375347/1‑71 (MQ=255) cTTTCCACGACTATAGCTGTAGTGCTGACTCGCGGTTTATGATCGACGCAGACGGCACTGAAGATATTCCg > 1:647739/1‑71 (MQ=255) cTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGAt > 1:6920199/1‑43 (MQ=255) cTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGAt > 1:7058258/1‑43 (MQ=255) tttCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGa > 1:2696528/1‑45 (MQ=255) tttCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGAc > 1:3174442/1‑52 (MQ=255) tttCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCg < 1:5115917/70‑1 (MQ=255) tttCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGt > 1:6247286/1‑71 (MQ=255) tttCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGt > 1:525692/1‑71 (MQ=255) ttCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACt < 1:3057883/57‑1 (MQ=255) tCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACg < 1:1956740/45‑1 (MQ=255) tCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGt < 1:237873/69‑1 (MQ=255) cACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGAt > 1:1348857/1‑38 (MQ=255) cACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGAt > 1:2877933/1‑38 (MQ=255) cACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCa > 1:7560190/1‑52 (MQ=255) cGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCa > 1:2271545/1‑50 (MQ=255) cGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCg > 1:6185354/1‑64 (MQ=255) cGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACa < 1:7420258/71‑1 (MQ=255) gACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACaa > 1:3034195/1‑71 (MQ=255) gACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACaa < 1:6083410/71‑1 (MQ=255) gACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACaa < 1:2197919/71‑1 (MQ=255) aCTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGTTATTcc < 1:1951/61‑1 (MQ=255) cTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATa > 1:1138015‑M2/1‑70 (MQ=255) tataGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCg < 1:173793/60‑1 (MQ=255) ataGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGt > 1:1557828/1‑60 (MQ=255) taGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATAtt > 1:639980/1‑55 (MQ=255) taGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAAc > 1:1614100/1‑64 (MQ=255) taGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATaa > 1:2888454‑M2/1‑67 (MQ=255) aGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATaaacg < 1:3290596‑M2/71‑6 (MQ=255) gCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGt < 1:2133848/57‑1 (MQ=255) gCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATaaacg > 1:6608669‑M2/1‑65 (MQ=255) ggTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTcc < 1:3640573/53‑1 (MQ=255) tAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCg < 1:4719705/52‑1 (MQ=255) gTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGt < 1:3011630/70‑1 (MQ=255) gTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGt < 1:6391749/70‑1 (MQ=255) gTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGt < 1:4286619/70‑1 (MQ=255) cTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGt > 1:4905684/1‑67 (MQ=255) cTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACt < 1:4284830/71‑1 (MQ=255) tGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACt > 1:5485736/1‑70 (MQ=255) tGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACt > 1:5314437/1‑70 (MQ=255) cTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATc > 1:335723/1‑71 (MQ=255) tCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg < 1:5435816/45‑1 (MQ=255) tCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg < 1:1061632/45‑1 (MQ=255) tCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg < 1:1463149/45‑1 (MQ=255) tCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACaa < 1:6640582/50‑1 (MQ=255) tCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAAt < 1:4856817/51‑1 (MQ=255) tCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAAt < 1:6844763/51‑1 (MQ=255) tCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTa < 1:7733170/63‑1 (MQ=255) cgcgTTTattgttcaacggaatatcttcagtgccgtctgcgtcgatc > 1:3187194‑M1/1‑7 (MQ=255) cgcgTTTattgttcaacggaatatcttcagtgccgtctgcgtcgatc > 1:2597918‑M1/1‑7 (MQ=255) gcgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAAc > 1:4188904/1‑63 (MQ=255) gcgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTa < 1:4465101/65‑1 (MQ=255) gcgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGt < 1:5504587/71‑1 (MQ=255) cgTTTattgttcaacggaatatcttcagtgccgtctgcgtcgatcataaaacgcgagtcagcactaccgc > 1:2685052‑M1/1‑5 (MQ=255) cgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTa < 1:1063294/71‑1 (MQ=255) gTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg < 1:2007047/41‑1 (MQ=255) gTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCTGt < 1:1758872/69‑1 (MQ=255) ttttATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATa > 1:7792307‑M2/1‑46 (MQ=255) ttATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCg > 1:2492120/1‑64 (MQ=255) tattgttcaacggaatatcttcagtgccgtcttcgtcgatcataaaacgc < 1:901351‑M1/50‑50 (MQ=255) tattgttcaacggaatatcttcagtgccgtctgcgtcgatcataaaacgcgagtcagcactaccgctatag > 1:4150599‑M1/1‑1 (MQ=255) tattgttcaacggaatatcttcagtgccgtctgcgtcgatcataaaacgcgagtcagcactaccgctatag > 1:3067785‑M1/1‑1 (MQ=255) tattgttcaacggaatatcttcagtgccgtctgcgtcgatcataaaa > 1:7792307‑M1/1‑1 (MQ=255) tattgttcaacggaatatcttcagtgccgtctgcgtc > 1:7502005‑M1/1‑1 (MQ=255) tattgttcaacggaatatcttcagtgccgtctgcgtc > 1:3231601‑M1/1‑1 (MQ=255) | AATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGC > AP009048/3187976‑3188116 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |